Non-Coding RNA Search

Ss1.1-rthg28_k13.5

Sequence:


               
               TGATGATAGGCGTCAAGGGCACCTGTCAGGTGGTCAGCTTCTCTGGGCGTCCATTTAACA
GGTGCCCTGGGTGATGTTTGTAATCAGGGAAGTTTGGTAAACAAAAAAATCTAACCTGCG
AGGAGACATGAGACCTTTAGAAAGTCAACCGAGGCTATCAAAAGAATTAAAATCTTATTT
GAATTGAGTAGCCTGTCTCACTGTAGACAGAAAGGTTTTTTTTTTTCCTTCTTCTGTGAA
AATGCTTTTTAATTAGTACAGTTGTTACTATTTAAGAAAAAATACCCTAAGTACTCTGTT
TACTTCTGGTGAAACAAAACCAGTCATTAGACTCGTTCTGTACCCCACCCCACCCCCACC
CCAGACTGGAATGGAATGGCTTTTCTGAAAAATCCCTACGTGTACACACACACACACCCC
TCATTTGTCTTATTAAGTTTGCTTCTCCTAGCTGCAATACAGATCACTTTTGGTTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGATAGGCGTCAAGGGCACCTGTCAGGTGGTCAGCTTCTCTGGGCGTCCATTTAACA
GGTGCCCTGGGTGATGTTTGTAATCAGGGAAGTTTGGTAAACAAAAAAATCTAACCTGCG
AGGAGACATGAGACCTTTAGAAAGTCAACCGAGGCTATCAAAAGAATTAAAATCTTATTT
GAATTGAGTAGCCTGTCTCACTGTAGACAGAAAGGTTTTTTTTTTTCCTTCTTCTGTGAA
AATGCTTTTTAATTAGTACAGTTGTTACTATTTAAGAAAAAATACCCTAAGTACTCTGTT
TACTTCTGGTGAAACAAAACCAGTCATTAGACTCGTTCTGTACCCCACCCCACCCCCACC
CCAGACTGGAATGGAATGGCTTTTCTGAAAAATCCCTACGTGTACACACACACACACCCC
TCATTTGTCTTATTAAGTTTGCTTCTCCTAGCTGCAATACAGATCACTTTTGGTTTTGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-314, - strand, RNAz p=0.997645

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-314, - strand, RNAz p=0.997645

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               37-480, gnl|bosTau2|chrX (1299982-1299547)
               

               
               37-480, gnl|Hg17|chrX (118533309-118532875)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-480, gnl|bosTau2|chrX (1299982-1299547)
               

               
               37-480, gnl|Hg17|chrX (118533309-118532875)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               thg (0.253582)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)

	37-480, gnl\|bosTau2\|chrX (1299982-1299547)
	37-480, gnl\|Hg17\|chrX (118533309-118532875)