Ss1.1-rthg28_m10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTGCGGCTTGGTGGAGGGGCTGGGCCTGCGCTCTCTCCTCCTTCCTCCCCGCCTCCTGC TGCCGGTAGGACCCGTCTCCCACTGCCGCTGGGACCGCGTGTCACCGTCATCCCCGAGCA CGATGCCCCCCAAAAAGGGAGGTGATGCAATTAAACCACCCCCAATCATTGGACGATTTG GAACCTCCTTGAAAATTGGTATTGTTGGATTGCCAAATGTTGGGAAATCTACCTTTTTCA ATGTATTAACCAATAGTCAAGCTTCAGCAGAAAACTTCCCATTCTGCACTATTGATCCTA ATGAGAGCAGAGTACCTGTGCCAGATGAAAGGTTTGACTTTCTTTGCCAGTACCACAAAC CAGCAAGCAAAATTCCTGCCTTTCTGAATGTAGTGGATATTGCTGGCCTTGTGAAAGGAG CTCACAATGGGCAAGGCCTGGGAAATGCCTTTTTATCTCATATTAGTGCCTGTGATGGAA TCTTTCATTTAACACGTGCTTTTGAAGATGATGATATCACACATGTTGAAGGAAGTGTAG ACCCTATTCGAGATATAGAAATAATACATGAAGAGCTTCAGCTTAAAGATGAGGAAATGA TTGGACCTATTATAGATAAACTAGAAAAAGTGGCTGTGAGAGGAGGAGATAAAAAACTAA AACCAGAATATGACATAATGTGCAAAGTCAAGTCCTGGGTTATAGATCAAAAGAAACCTG TTCGCTTCTATCATGATTGGAATGACAAAGAGATTGAAGTGTTGAATAAACACTTATTTC TGACTTCAAAACCAATGGTCTACTTGGTTAATCTTTCTGAAAAAGACTACATTAGAAAGA AAAACAAATGGTTGATAAAAATTAAAGAGTGGGTGGACAAGTATGACCCAGGTGCCTTGG TCATTCCTTTTAGTGGGGCCTTGGAACTCAAGTTGCAAGAATTGAGTGCTGAGGAGAGAC AGAAGTATCTGGAAGCGAACATGACACAAAGTGCTTTGCCAAAGATCATTAAGGCTGGGT TTGCAGCACTCCAACTAGAATACTTTTTCACTGCAGGCCCAGATGAAGTGCGTGCATGGA CCATCAGGAAAGGGACGAAGGCTCCTCAAGCTGCAGGAAAGATTCACACAGATTTTGAAA AAGGATTCATTATGGCTGAAGTAATGAAATACGAAGATTTTAAAGAGGAAGGTTCTGAAA ATGCGGTCAAGGCTGCTGGAAAGTACAGACAACAAGGCAGAAATTATATCGTTGAAGATG GAGATATTATCTTCTTCAAATTTAATACACCTCAACAACCGAAGAAGAAATAAATTTTAG TTATTGCTCAGATAAATGTACAACGTCCAGAAGGCATATGCTTTTTTAAAAGAGAAAAAT CAAAATTTCTGAAAACTGAATGGGGTAAAGTTGGGAATAGGAATCTTCTACAAACAGAAT TATTTTTATTTGTTTTAAAATTAAAATACTGTGTACCTCCAATGAAATGCAAGTTCACTA AATGTGAACAGCTTTGCTTTTCACGTGATTAAGACCCTACTCCAAATTGTAGAAGCTTTT CAGGAACCATATTACTCTCATGATACTTCATTAATCTCCATCATGTATACCAAGCCTGAC ACATTTGACAGTGAGGACAATGTGGCTTGCTCCTTTTTGAATCTACAGATAATGCATGTT TTACAGTACTCCAGATGTCTACACTCAATAAAACATTTGACAAAACCAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTGCGGCTTGGTGGAGGGGCTGGGCCTGCGCTCTCTCCTCCTTCCTCCCCGCCTCCTGC TGCCGGTAGGACCCGTCTCCCACTGCCGCTGGGACCGCGTGTCACCGTCATCCCCGAGCA CGATGCCCCCCAAAAAGGGAGGTGATGCAATTAAACCACCCCCAATCATTGGACGATTTG GAACCTCCTTGAAAATTGGTATTGTTGGATTGCCAAATGTTGGGAAATCTACCTTTTTCA ATGTATTAACCAATAGTCAAGCTTCAGCAGAAAACTTCCCATTCTGCACTATTGATCCTA ATGAGAGCAGAGTACCTGTGCCAGATGAAAGGTTTGACTTTCTTTGCCAGTACCACAAAC CAGCAAGCAAAATTCCTGCCTTTCTGAATGTAGTGGATATTGCTGGCCTTGTGAAAGGAG CTCACAATGGGCAAGGCCTGGGAAATGCCTTTTTATCTCATATTAGTGCCTGTGATGGAA TCTTTCATTTAACACGTGCTTTTGAAGATGATGATATCACACATGTTGAAGGAAGTGTAG ACCCTATTCGAGATATAGAAATAATACATGAAGAGCTTCAGCTTAAAGATGAGGAAATGA TTGGACCTATTATAGATAAACTAGAAAAAGTGGCTGTGAGAGGAGGAGATAAAAAACTAA AACCAGAATATGACATAATGTGCAAAGTCAAGTCCTGGGTTATAGATCAAAAGAAACCTG TTCGCTTCTATCATGATTGGAATGACAAAGAGATTGAAGTGTTGAATAAACACTTATTTC TGACTTCAAAACCAATGGTCTACTTGGTTAATCTTTCTGAAAAAGACTACATTAGAAAGA AAAACAAATGGTTGATAAAAATTAAAGAGTGGGTGGACAAGTATGACCCAGGTGCCTTGG TCATTCCTTTTAGTGGGGCCTTGGAACTCAAGTTGCAAGAATTGAGTGCTGAGGAGAGAC AGAAGTATCTGGAAGCGAACATGACACAAAGTGCTTTGCCAAAGATCATTAAGGCTGGGT TTGCAGCACTCCAACTAGAATACTTTTTCACTGCAGGCCCAGATGAAGTGCGTGCATGGA CCATCAGGAAAGGGACGAAGGCTCCTCAAGCTGCAGGAAAGATTCACACAGATTTTGAAA AAGGATTCATTATGGCTGAAGTAATGAAATACGAAGATTTTAAAGAGGAAGGTTCTGAAA ATGCGGTCAAGGCTGCTGGAAAGTACAGACAACAAGGCAGAAATTATATCGTTGAAGATG GAGATATTATCTTCTTCAAATTTAATACACCTCAACAACCGAAGAAGAAATAAATTTTAG TTATTGCTCAGATAAATGTACAACGTCCAGAAGGCATATGCTTTTTTAAAAGAGAAAAAT CAAAATTTCTGAAAACTGAATGGGGTAAAGTTGGGAATAGGAATCTTCTACAAACAGAAT TATTTTTATTTGTTTTAAAATTAAAATACTGTGTACCTCCAATGAAATGCAAGTTCACTA AATGTGAACAGCTTTGCTTTTCACGTGATTAAGACCCTACTCCAAATTGTAGAAGCTTTT CAGGAACCATATTACTCTCATGATACTTCATTAATCTCCATCATGTATACCAAGCCTGAC ACATTTGACAGTGAGGACAATGTGGCTTGCTCCTTTTTGAATCTACAGATAATGCATGTT TTACAGTACTCCAGATGTCTACACTCAATAAAACATTTGACAAAACCAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1210-1329, - strand, RNAz p=0.550532 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1210-1329, - strand, RNAz p=0.550532 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 1-125, gnl|bosTau2|chr2 (14297607-14297482) | |
| 1-125, gnl|dasNov1|scaffold_13159 (43115-43189) | |
| 1-125, gnl|dasNov1|scaffold_13159 (43057-43478) | |
| 1-125, gnl|echTel1|scaffold_309747 (41946-42365) | |
| 1-125, gnl|galGal2|chrUn (37223425-37222935) | |
| 1-125, gnl|hg17|chr12 (54552671-54552746) | |
| 1-125, gnl|hg17|chr2 (174938644-174939113) | |
| 1-125, gnl|Hg17|chr2 (174938808-174938684) | |
| 1-125, gnl|loxAfr1|scaffold_137282 (28966-29432) | |
| 1-125, gnl|mm7|chr2 (73057979-73058315) | |
| 1-125, gnl|Mm7|chr2 (73058119-73057999) | |
| 1-125, gnl|mm7|chr4 (52255500-52255457) | |
| 1-125, gnl|monDom2|scaffold_2 (73799205-73799667) | |
| 1-125, gnl|monDom2|scaffold_32 (8511267-8511201) | |
| 1-125, gnl|oryCun1|scaffold_207350 (52684-52618) | |
| 1-125, gnl|oryCun1|scaffold_207350 (52744-52337) | |
| 1-125, gnl|panTro1|chr10 (55780786-55780861) | |
| 1-125, gnl|panTro1|chr13 (64574733-64575201) | |
| 1-125, gnl|rheMac2|chr12 (37872567-37873039) | |
| 1-125, gnl|rheMac2|chr16 (44229533-44229460) | |
| 1-125, gnl|rn3|chr3 (55611850-55612186) | |
| 1-125, gnl|rn3|chr5 (69304177-69304119) | |
| 217-367, gnl|bosTau2|chr2 (14278313-14278163) | |
| 217-367, gnl|canFam2|chr36 (21347065-21347290) | |
| 217-367, gnl|danRer3|chr6 (6069399-6069591) | |
| 217-367, gnl|dasNov1|scaffold_143208 (1463-1692) | |
| 217-367, gnl|echTel1|scaffold_309747 (17141-17370) | |
| 217-367, gnl|fr1|chrUn (7494196-7494363) | |
| 217-367, gnl|galGal2|chrUn (154886567-154886771) | |
| 217-367, gnl|hg17|chr2 (174919500-174919725) | |
| 217-367, gnl|Hg17|chr2 (174919693-174919543) | |
| 217-367, gnl|loxAfr1|scaffold_21821 (15981-16209) | |
| 217-367, gnl|mm7|chr2 (73047003-73047223) | |
| 217-367, gnl|Mm7|chr2 (73047191-73047041) | |
| 217-367, gnl|monDom2|scaffold_2 (73746022-73746267) | |
| 217-367, gnl|panTro1|chr13 (64555558-64555783) | |
| 217-367, gnl|rheMac2|chr12 (37853936-37854161) | |
| 217-367, gnl|rn3|chr3 (55600488-55600707) | |
| 217-367, gnl|tetNig1|chr2 (11266049-11265881) | |
| 217-367, gnl|xenTro1|scaffold_65 (789762-789524) | |
| 482-672, gnl|bosTau2|chr2 (14204075-14203883) | |
| 482-672, gnl|canFam2|chr36 (21263660-21263861) | |
| 482-672, gnl|danRer3|chr6 (6066038-6066236) | |
| 482-672, gnl|dasNov1|scaffold_29881 (1442-1242) | |
| 482-672, gnl|echTel1|scaffold_317718 (67747-67949) | |
| 482-672, gnl|fr1|chrUn (7485786-7485979) | |
| 482-672, gnl|galGal2|chr7 (17739039-17738844) | |
| 482-672, gnl|hg17|chr2 (174832044-174832245) | |
| 482-672, gnl|Hg17|chr2 (174832251-174832059) | |
| 482-672, gnl|loxAfr1|scaffold_27019 (11320-11119) | |
| 482-672, gnl|mm7|chr2 (73000438-73000639) | |
| 482-672, gnl|Mm7|chr2 (73000644-73000453) | |
| 482-672, gnl|monDom2|scaffold_2 (73626520-73626719) | |
| 482-672, gnl|oryCun1|scaffold_200512 (44329-44530) | |
| 482-672, gnl|panTro1|chr13 (64467922-64468123) | |
| 482-672, gnl|rheMac2|chr12 (37768848-37769049) | |
| 482-672, gnl|rn3|chr3 (55553150-55553351) | |
| 482-672, gnl|tetNig1|chr10 (8366924-8366727) | |
| 482-672, gnl|xenTro1|scaffold_65 (831978-831767) | |
| 850-991, gnl|bosTau2|chr2 (14141301-14141160) | |
| 850-991, gnl|Hg17|chr2 (174772300-174772159) | |
| 850-991, gnl|Mm7|chr2 (72943931-72943790) | |
| 1210-1728, gnl|bosTau2|chr2 (14134890-14134372) | |
| 1210-1728, gnl|Hg17|chr2 (174765764-174765242) | |
| 1210-1728, gnl|Mm7|chr2 (72937442-72936915) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-125, gnl|bosTau2|chr2 (14297607-14297482) | |
| 1-125, gnl|dasNov1|scaffold_13159 (43115-43189) | |
| 1-125, gnl|dasNov1|scaffold_13159 (43057-43478) | |
| 1-125, gnl|echTel1|scaffold_309747 (41946-42365) | |
| 1-125, gnl|galGal2|chrUn (37223425-37222935) | |
| 1-125, gnl|hg17|chr12 (54552671-54552746) | |
| 1-125, gnl|hg17|chr2 (174938644-174939113) | |
| 1-125, gnl|Hg17|chr2 (174938808-174938684) | |
| 1-125, gnl|loxAfr1|scaffold_137282 (28966-29432) | |
| 1-125, gnl|mm7|chr2 (73057979-73058315) | |
| 1-125, gnl|Mm7|chr2 (73058119-73057999) | |
| 1-125, gnl|mm7|chr4 (52255500-52255457) | |
| 1-125, gnl|monDom2|scaffold_2 (73799205-73799667) | |
| 1-125, gnl|monDom2|scaffold_32 (8511267-8511201) | |
| 1-125, gnl|oryCun1|scaffold_207350 (52684-52618) | |
| 1-125, gnl|oryCun1|scaffold_207350 (52744-52337) | |
| 1-125, gnl|panTro1|chr10 (55780786-55780861) | |
| 1-125, gnl|panTro1|chr13 (64574733-64575201) | |
| 1-125, gnl|rheMac2|chr12 (37872567-37873039) | |
| 1-125, gnl|rheMac2|chr16 (44229533-44229460) | |
| 1-125, gnl|rn3|chr3 (55611850-55612186) | |
| 1-125, gnl|rn3|chr5 (69304177-69304119) | |
| 217-367, gnl|bosTau2|chr2 (14278313-14278163) | |
| 217-367, gnl|canFam2|chr36 (21347065-21347290) | |
| 217-367, gnl|danRer3|chr6 (6069399-6069591) | |
| 217-367, gnl|dasNov1|scaffold_143208 (1463-1692) | |
| 217-367, gnl|echTel1|scaffold_309747 (17141-17370) | |
| 217-367, gnl|fr1|chrUn (7494196-7494363) | |
| 217-367, gnl|galGal2|chrUn (154886567-154886771) | |
| 217-367, gnl|hg17|chr2 (174919500-174919725) | |
| 217-367, gnl|Hg17|chr2 (174919693-174919543) | |
| 217-367, gnl|loxAfr1|scaffold_21821 (15981-16209) | |
| 217-367, gnl|mm7|chr2 (73047003-73047223) | |
| 217-367, gnl|Mm7|chr2 (73047191-73047041) | |
| 217-367, gnl|monDom2|scaffold_2 (73746022-73746267) | |
| 217-367, gnl|panTro1|chr13 (64555558-64555783) | |
| 217-367, gnl|rheMac2|chr12 (37853936-37854161) | |
| 217-367, gnl|rn3|chr3 (55600488-55600707) | |
| 217-367, gnl|tetNig1|chr2 (11266049-11265881) | |
| 217-367, gnl|xenTro1|scaffold_65 (789762-789524) | |
| 482-672, gnl|bosTau2|chr2 (14204075-14203883) | |
| 482-672, gnl|canFam2|chr36 (21263660-21263861) | |
| 482-672, gnl|danRer3|chr6 (6066038-6066236) | |
| 482-672, gnl|dasNov1|scaffold_29881 (1442-1242) | |
| 482-672, gnl|echTel1|scaffold_317718 (67747-67949) | |
| 482-672, gnl|fr1|chrUn (7485786-7485979) | |
| 482-672, gnl|galGal2|chr7 (17739039-17738844) | |
| 482-672, gnl|hg17|chr2 (174832044-174832245) | |
| 482-672, gnl|Hg17|chr2 (174832251-174832059) | |
| 482-672, gnl|loxAfr1|scaffold_27019 (11320-11119) | |
| 482-672, gnl|mm7|chr2 (73000438-73000639) | |
| 482-672, gnl|Mm7|chr2 (73000644-73000453) | |
| 482-672, gnl|monDom2|scaffold_2 (73626520-73626719) | |
| 482-672, gnl|oryCun1|scaffold_200512 (44329-44530) | |
| 482-672, gnl|panTro1|chr13 (64467922-64468123) | |
| 482-672, gnl|rheMac2|chr12 (37768848-37769049) | |
| 482-672, gnl|rn3|chr3 (55553150-55553351) | |
| 482-672, gnl|tetNig1|chr10 (8366924-8366727) | |
| 482-672, gnl|xenTro1|scaffold_65 (831978-831767) | |
| 850-991, gnl|bosTau2|chr2 (14141301-14141160) | |
| 850-991, gnl|Hg17|chr2 (174772300-174772159) | |
| 850-991, gnl|Mm7|chr2 (72943931-72943790) | |
| 1210-1728, gnl|bosTau2|chr2 (14134890-14134372) | |
| 1210-1728, gnl|Hg17|chr2 (174765764-174765242) | |
| 1210-1728, gnl|Mm7|chr2 (72937442-72936915) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| fco (0.628832) | |
| mgp (0.461361) | |
| bfe (0.449573) | |
| ste (0.405625) | |
| ret (0.3862) | |
| elu (0.385356) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| liv (0.292569) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| nms (0.213858) | |
| hea (0.204499) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.628832) | |
| mgp (0.461361) | |
| bfe (0.449573) | |
| ste (0.405625) | |
| ret (0.3862) | |
| elu (0.385356) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| liv (0.292569) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ova (0.258264) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| nms (0.213858) | |
| hea (0.204499) | |
| gul (0.177588) | |
| fty (0.17584) | |
| eye (0.170503) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |