Non-Coding RNA Search

Ss1.1-rthg28_m4.5

Sequence:


               
               AGCTGCCCAGCGAGGGAAAGCTAGGCCCCTGCCCAAGAAAGCCCCTCCTAAGGCCAAAAC
TCCTGCCAAGAAAGCCAGACCCTCACCCTCAGTCATCAAGAAGCCTAGTGTTGGCTCTTC
GAAGAAGCCCGCGGCCAGTGTGAGAAAGGAGGTGAAGTTGCCTGGCAAGGGCAAGTCCAC
CACGAAGAAATCCTTCAAAGCAAAAAAGTAAATTTTATAGGAAAAAAGGGTATCTTGATG
AAATTCAAAATCTTATTTTCTAAGGTCAGTGTGCATTTGTTTTAGTTTCGATGCTTTTAA
AAGTACATTTTTTCCCCCTCTCCTATGAACGTTACGGGGAGGGAATATAAATAAACCAAT
TTAGGCATTTGTTAGCTTTAGGTGCTGTTCTTGGTGCCTGCCCCTTCCCCCGGTCATTTT
CATTTCCTCGGTAATTCTGGATTTTTCCTGAACCGTGTAATCTGTACTTGTCCTTTTTTC
TCTTTCTACCCCAACCCTCTTTGTTTTTTTATGGTCAGCTTTGGCTTTTTTTTTTTTTTT
TCCTTCCAGTTTTATCTAAACAGTTGCAAAGATTTTTTGTGTTTGTTAGAAAGCATTAAG
AACGGGATGCTGGTCAGGTGCTGGCAGTAAAAAGGAGGCAGTATAACACTGACTGGATTA
TAAAGCCTCCTACCTGGAGACTTCAATTATAGCTATAATAATTAATCTTATTTATAAAGC
CACTCCACTAACCCTTTCTCTCCAACTATACACATGGAGATGTCTTAGCTTTGGGAATAA
GCCAAAAGTATTATGATCTCATTAGATTCTGAAGATACATGACTTTGGGCCACTTGTCAC
ATTGGTCATTTCCAGGTATTTTTTCCATTGGCCCCTGGGCATTGCATTCCCTCAGCAGCA
AGCACAAGATCTCTCCATCACTTGGTTTTTGACTGAAGGGGAAATATAGGAATATATTGA
ATTTGTGATTTCTGGTGTGACTGTGTTACTAAAAATCAAAACATATAAAATCTTCTTGAT
CAAATGTTTAAATATATTTTTTAATATTCGGAGCATGAGCTGTCACTTTCCTTTTTGCCG
TTTTTATAAGGAAATGTTGGAGAGTTACACCATCGCTAATATAGAAATGTTAAGTGGAAG
AACATACAGTTTACTAAAATAAACTAGATCCCAGATTCATCTGTGGGTTTTTCCCCTCCT
TTCTTTCCACAGCACTTTTGATAACAAGCAAGTGACTTCCTTTTTGAGTTACTTTTAAAA
AAAGAAAAAACAAACGAAGCCCGACTACCTAATAATCCTTTCTTATTTGTATTTGTTTTA
GTATTGTGAAGTTGTGTTAAAAGTACTAGCTTTCTAAGAAGTATTGAGTTCTGGTTATCA
TTTATCTTCCCTGTGGCACTTGACATTTTAATTGTCTTAAACTCTTGGGTGTAAATCTTC
TGGCTCCTTGCGTGCTGCCAGAGGCAAAAGATGTTTGTTTCATTCATTCCATTTGCATTG
TCTCCTGGGATCCTGTCTGCAGCCTAAAGTGTGGCTGGGAAATGGACTTGAGAAGATTGG
CTTGAATTAGATCCATAATCATGTGTGATCCCATCATGAGTTCATTGGAATTTGTGTTGC
ATGTAAGGCAATCTTTCCTGTTGTAAATCTTCCTTTTTTTATGTACATATATTTTGAAAA
ATATGAATAAACATGAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCCCAGCGAGGGAAAGCTAGGCCCCTGCCCAAGAAAGCCCCTCCTAAGGCCAAAAC
TCCTGCCAAGAAAGCCAGACCCTCACCCTCAGTCATCAAGAAGCCTAGTGTTGGCTCTTC
GAAGAAGCCCGCGGCCAGTGTGAGAAAGGAGGTGAAGTTGCCTGGCAAGGGCAAGTCCAC
CACGAAGAAATCCTTCAAAGCAAAAAAGTAAATTTTATAGGAAAAAAGGGTATCTTGATG
AAATTCAAAATCTTATTTTCTAAGGTCAGTGTGCATTTGTTTTAGTTTCGATGCTTTTAA
AAGTACATTTTTTCCCCCTCTCCTATGAACGTTACGGGGAGGGAATATAAATAAACCAAT
TTAGGCATTTGTTAGCTTTAGGTGCTGTTCTTGGTGCCTGCCCCTTCCCCCGGTCATTTT
CATTTCCTCGGTAATTCTGGATTTTTCCTGAACCGTGTAATCTGTACTTGTCCTTTTTTC
TCTTTCTACCCCAACCCTCTTTGTTTTTTTATGGTCAGCTTTGGCTTTTTTTTTTTTTTT
TCCTTCCAGTTTTATCTAAACAGTTGCAAAGATTTTTTGTGTTTGTTAGAAAGCATTAAG
AACGGGATGCTGGTCAGGTGCTGGCAGTAAAAAGGAGGCAGTATAACACTGACTGGATTA
TAAAGCCTCCTACCTGGAGACTTCAATTATAGCTATAATAATTAATCTTATTTATAAAGC
CACTCCACTAACCCTTTCTCTCCAACTATACACATGGAGATGTCTTAGCTTTGGGAATAA
GCCAAAAGTATTATGATCTCATTAGATTCTGAAGATACATGACTTTGGGCCACTTGTCAC
ATTGGTCATTTCCAGGTATTTTTTCCATTGGCCCCTGGGCATTGCATTCCCTCAGCAGCA
AGCACAAGATCTCTCCATCACTTGGTTTTTGACTGAAGGGGAAATATAGGAATATATTGA
ATTTGTGATTTCTGGTGTGACTGTGTTACTAAAAATCAAAACATATAAAATCTTCTTGAT
CAAATGTTTAAATATATTTTTTAATATTCGGAGCATGAGCTGTCACTTTCCTTTTTGCCG
TTTTTATAAGGAAATGTTGGAGAGTTACACCATCGCTAATATAGAAATGTTAAGTGGAAG
AACATACAGTTTACTAAAATAAACTAGATCCCAGATTCATCTGTGGGTTTTTCCCCTCCT
TTCTTTCCACAGCACTTTTGATAACAAGCAAGTGACTTCCTTTTTGAGTTACTTTTAAAA
AAAGAAAAAACAAACGAAGCCCGACTACCTAATAATCCTTTCTTATTTGTATTTGTTTTA
GTATTGTGAAGTTGTGTTAAAAGTACTAGCTTTCTAAGAAGTATTGAGTTCTGGTTATCA
TTTATCTTCCCTGTGGCACTTGACATTTTAATTGTCTTAAACTCTTGGGTGTAAATCTTC
TGGCTCCTTGCGTGCTGCCAGAGGCAAAAGATGTTTGTTTCATTCATTCCATTTGCATTG
TCTCCTGGGATCCTGTCTGCAGCCTAAAGTGTGGCTGGGAAATGGACTTGAGAAGATTGG
CTTGAATTAGATCCATAATCATGTGTGATCCCATCATGAGTTCATTGGAATTTGTGTTGC
ATGTAAGGCAATCTTTCCTGTTGTAAATCTTCCTTTTTTTATGTACATATATTTTGAAAA
ATATGAATAAACATGAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               120-239, - strand, RNAz p=0.596302
               

               
               280-434, + strand, RNAz p=0.935018
               

               
               633-747, - strand, RNAz p=0.954763

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.596302
               

               
               280-434, + strand, RNAz p=0.935018
               

               
               633-747, - strand, RNAz p=0.954763

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC053327, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC053327, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1706, gnl|bosTau2|chr2 (85724268-85722571)
               

               
               1-1706, gnl|Hg17|chr1 (20816806-20814481)
               

               
               1-1706, gnl|Mm7|chr4 (137619971-137621587)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1706, gnl|bosTau2|chr2 (85724268-85722571)
               

               
               1-1706, gnl|Hg17|chr1 (20816806-20814481)
               

               
               1-1706, gnl|Mm7|chr4 (137619971-137621587)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

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               cbe (0.956938)
               

               
               thg (0.887536)
               

               
               lin (0.873617)
               

               
               liv (0.731422)
               

               
               mgp (0.692042)
               

               
               mga (0.64082)
               

               
               sug (0.636456)
               

               
               gul (0.532765)
               

               
               ova (0.516529)
               

               
               cty (0.41632)
               

               
               ret (0.3862)
               

               
               ill (0.351185)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               jej (0.296765)
               

               
               fat (0.294855)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               thg (0.887536)
               

               
               lin (0.873617)
               

               
               liv (0.731422)
               

               
               mgp (0.692042)
               

               
               mga (0.64082)
               

               
               sug (0.636456)
               

               
               gul (0.532765)
               

               
               ova (0.516529)
               

               
               cty (0.41632)
               

               
               ret (0.3862)
               

               
               ill (0.351185)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               lun (0.300978)
               

               
               isp (0.300752)
               

               
               jej (0.296765)
               

               
               fat (0.294855)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	120-239, - strand, RNAz p=0.596302
	280-434, + strand, RNAz p=0.935018
	633-747, - strand, RNAz p=0.954763

	1-1706, gnl\|bosTau2\|chr2 (85724268-85722571)
	1-1706, gnl\|Hg17\|chr1 (20816806-20814481)
	1-1706, gnl\|Mm7\|chr4 (137619971-137621587)

	cbe (0.956938)
	thg (0.887536)
	lin (0.873617)
	liv (0.731422)
	mgp (0.692042)
	mga (0.64082)
	sug (0.636456)
	gul (0.532765)
	ova (0.516529)
	cty (0.41632)
	ret (0.3862)
	ill (0.351185)
	vin (0.332557)
	tbr (0.308356)
	lun (0.300978)
	isp (0.300752)
	jej (0.296765)
	fat (0.294855)
	fce (0.271592)
	ste (0.270416)
	tra (0.246184)
	pan (0.23596)
	ece (0.229305)
	tes (0.207814)
	hea (0.204499)
	sag (0.182715)
	ton (0.1755)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	ski (0.146735)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	eru (0.120048)
	clu (0.119646)
	cbl (0.114797)
	nbm (0.0993246)