Non-Coding RNA Search

Ss1.1-rthg28_o4.5

Sequence:


               
               CAGAAATGCGCAAAAATGGAGTCTTCTGAGAGCAATGTTGTACTGCAAGTTAGATGAGAA
ACCCAGCTAAATAATACATATCAGCATATCTCCAGCTGTAAATAAACAAACTTACCTGTA
TTACAGTGAGCTTTTAAAAATCGGGAATGAATTCTCCCATGATGACGTATTCCGGGCAGC
AGTGTACGGAATCTAGAGACAGGACGCTAGGAAGTCGGTGGTTATGTGCGGGAGCATGCC
ACCACACACACTGCAGTCTGCACGTGTAAATTTAACTCCGGCACCGGGAGTTTGAAATTC
TTGTCCTGATAGTCAGGACGCATCAAGATTTTCCATACTGAACATCACATGTGTTTCATT
ATCTTCACAACCCAGGATGCATTCCAAATGAAGTATCTAACAGGTTTTAGTAGCATATAG
CCTCTGTGTTCTCTCCTCCTGCTTGCTGGCATGTAGAAGTTGGTATGACCATGGTTAACT
GAGCTACCTCCTCAGTCAACAGAAGACCGTACTGGTGAAGTTGGAACCTTCCGGGTTTGC
CGAAGATTTCTTACAAGTCTCACTGACATAAATATGCAAGTGTGAGGTGATTAAGAGAAA
TTGGAGAGGGTGGAAGGAGGCAGAGGTGGCTTCTGTCACTCAGTGTGCACCACAGAATAA
ACGGGCTGTGTAAAGAATAGCCATACCACTGTGCTGTCTCTATCTTTCAGTGGGGTGTTT
ACAGACAGATGCATGTCTTTTTACCAAAATATTGTATAACCCAGAAACGACTTGTATTTT
TGTGTGTTTCCGTATTTCTCTTAATATTTTATAAATTGTCTTGCAAAAAATAGAATGCGT
GTGTAGTTCACAAATGTTACATTTCAGAGACTGTAGGGAAAAAGTAATTTATTTTAAGAA
ATTGTCAATAAATGTCTTACTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAATGCGCAAAAATGGAGTCTTCTGAGAGCAATGTTGTACTGCAAGTTAGATGAGAA
ACCCAGCTAAATAATACATATCAGCATATCTCCAGCTGTAAATAAACAAACTTACCTGTA
TTACAGTGAGCTTTTAAAAATCGGGAATGAATTCTCCCATGATGACGTATTCCGGGCAGC
AGTGTACGGAATCTAGAGACAGGACGCTAGGAAGTCGGTGGTTATGTGCGGGAGCATGCC
ACCACACACACTGCAGTCTGCACGTGTAAATTTAACTCCGGCACCGGGAGTTTGAAATTC
TTGTCCTGATAGTCAGGACGCATCAAGATTTTCCATACTGAACATCACATGTGTTTCATT
ATCTTCACAACCCAGGATGCATTCCAAATGAAGTATCTAACAGGTTTTAGTAGCATATAG
CCTCTGTGTTCTCTCCTCCTGCTTGCTGGCATGTAGAAGTTGGTATGACCATGGTTAACT
GAGCTACCTCCTCAGTCAACAGAAGACCGTACTGGTGAAGTTGGAACCTTCCGGGTTTGC
CGAAGATTTCTTACAAGTCTCACTGACATAAATATGCAAGTGTGAGGTGATTAAGAGAAA
TTGGAGAGGGTGGAAGGAGGCAGAGGTGGCTTCTGTCACTCAGTGTGCACCACAGAATAA
ACGGGCTGTGTAAAGAATAGCCATACCACTGTGCTGTCTCTATCTTTCAGTGGGGTGTTT
ACAGACAGATGCATGTCTTTTTACCAAAATATTGTATAACCCAGAAACGACTTGTATTTT
TGTGTGTTTCCGTATTTCTCTTAATATTTTATAAATTGTCTTGCAAAAAATAGAATGCGT
GTGTAGTTCACAAATGTTACATTTCAGAGACTGTAGGGAAAAAGTAATTTATTTTAAGAA
ATTGTCAATAAATGTCTTACTGCT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               5-386, gnl|bosTau2|chr18 (1418704-1419093)
               

               
               5-386, gnl|Hg17|chr16 (73761852-73762237)
               

               
               5-386, gnl|Mm7|chr8 (110270732-110271435)
               


               
               478-924, gnl|bosTau2|chr18 (1419131-1419544)
               

               
               478-924, gnl|Hg17|chr16 (73762325-73762757)
               

               
               478-924, gnl|Mm7|chr8 (110271498-110271920)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-386, gnl|bosTau2|chr18 (1418704-1419093)
               

               
               5-386, gnl|Hg17|chr16 (73761852-73762237)
               

               
               5-386, gnl|Mm7|chr8 (110270732-110271435)
               


               
               478-924, gnl|bosTau2|chr18 (1419131-1419544)
               

               
               478-924, gnl|Hg17|chr16 (73762325-73762757)
               

               
               478-924, gnl|Mm7|chr8 (110271498-110271920)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               bla (0.124347)

	5-386, gnl\|bosTau2\|chr18 (1418704-1419093)
	5-386, gnl\|Hg17\|chr16 (73761852-73762237)
	5-386, gnl\|Mm7\|chr8 (110270732-110271435)

	478-924, gnl\|bosTau2\|chr18 (1419131-1419544)
	478-924, gnl\|Hg17\|chr16 (73762325-73762757)
	478-924, gnl\|Mm7\|chr8 (110271498-110271920)