Non-Coding RNA Search

Ss1.1-rthg29_l21.5

Sequence:


               
               GCTGTTTCCTACCTGGAAAATGGTTTCTCTGAATTGCAGTGTCTGAGGGTTACTGGTAAA
GAAGCTTAGAACTTCAACTCGAACCTGCAGTGCTCCAGTCCCTTTTGTAACCAGATGGCT
TCTGTTTGTCATGTTGGGCTCATGAGTAAAAAGCCTGTTCCCACAGTGTCCGCTCTCGCT
CACATGTCCTTCCCTGTCCTCAGCAACAGGGTGAGCCCCACATATTTTTGGCAGGTGTGG
AAGTGAAACTTACCCAAAGAACTCTAGATGTAAAGATTTGAACTTCTGCAAGAAGTACAA
CTCAGGAGAGCTGTATTTTCAAGGATAAAAATGTTTATAATTGGGGGTTGGGGAGAAAAA
TTACTGTTCATGGTAAAAGATATTTAGCAACTATGGTATTCTTACTCTGAAGATTTTTGC
ACACTCAGGCTATCTGAGATCCTGGTAATCATCCTTCTGTGAAAAATGTACAGAGATGCA
GGTCTGTAATATAAAAATCTTAAACATTATATAGCTCTTCCTGCACTGTTTTATTTTATT
TCTTTATTTTCTTATTCATTTGCTAAATACCTATAATATTTTGTCAAATGCACTAAACAT
TTGGGTTGAAATCTCTTTTTTATTTTGTGGGGATTTTGGTTTTGCCCTTTTTAGGGGGGT
GGTTATTTTTGAGGGTTTAACGTGCCCAGAAGCTGTTGTGTCTGACACTTGTCATGATCA
ACAACAGCAACAACAAAGGTAGAAAATACTCCTACTGACATAGCTACCTGTGATGTACTT
CCTTAGGGCTTTTAAGGATGAGCCATTCAAATAGAGTGACCCTTCATGGACCGAAACTTG
AATCACTGCAAAATGAATCTAGGTTGCTGTCACTTTTTCTTTTCTTTTCTTGTGGGTGGC
GGGGCTCGATGTAGATTTTACTCTATGTACAGAATTTAATGTTGAATATATTAAAATAAC
AAATCTGGCATGGTTTGGAGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAATTGT
GCTCTGACGGTTTAAAAAAAACGACAAGATTGTCAAGCATTCCGTATTAACAGTGGATGT
AGAAAATTTTTTCAGATGGATAAAATGTATATGGTACAGATGTAAAGTTTTCTATGTAAA
AAATTCTGTACAACTTTCTGTACAATATTGATTCTCATCTGGCATATTCTAATCAGGTTA
CAGGTCAATAAAGTTTTTGGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTTTCCTACCTGGAAAATGGTTTCTCTGAATTGCAGTGTCTGAGGGTTACTGGTAAA
GAAGCTTAGAACTTCAACTCGAACCTGCAGTGCTCCAGTCCCTTTTGTAACCAGATGGCT
TCTGTTTGTCATGTTGGGCTCATGAGTAAAAAGCCTGTTCCCACAGTGTCCGCTCTCGCT
CACATGTCCTTCCCTGTCCTCAGCAACAGGGTGAGCCCCACATATTTTTGGCAGGTGTGG
AAGTGAAACTTACCCAAAGAACTCTAGATGTAAAGATTTGAACTTCTGCAAGAAGTACAA
CTCAGGAGAGCTGTATTTTCAAGGATAAAAATGTTTATAATTGGGGGTTGGGGAGAAAAA
TTACTGTTCATGGTAAAAGATATTTAGCAACTATGGTATTCTTACTCTGAAGATTTTTGC
ACACTCAGGCTATCTGAGATCCTGGTAATCATCCTTCTGTGAAAAATGTACAGAGATGCA
GGTCTGTAATATAAAAATCTTAAACATTATATAGCTCTTCCTGCACTGTTTTATTTTATT
TCTTTATTTTCTTATTCATTTGCTAAATACCTATAATATTTTGTCAAATGCACTAAACAT
TTGGGTTGAAATCTCTTTTTTATTTTGTGGGGATTTTGGTTTTGCCCTTTTTAGGGGGGT
GGTTATTTTTGAGGGTTTAACGTGCCCAGAAGCTGTTGTGTCTGACACTTGTCATGATCA
ACAACAGCAACAACAAAGGTAGAAAATACTCCTACTGACATAGCTACCTGTGATGTACTT
CCTTAGGGCTTTTAAGGATGAGCCATTCAAATAGAGTGACCCTTCATGGACCGAAACTTG
AATCACTGCAAAATGAATCTAGGTTGCTGTCACTTTTTCTTTTCTTTTCTTGTGGGTGGC
GGGGCTCGATGTAGATTTTACTCTATGTACAGAATTTAATGTTGAATATATTAAAATAAC
AAATCTGGCATGGTTTGGAGAGGTTAGATTTACTGGAAATGTATTCATACTGTGAATTGT
GCTCTGACGGTTTAAAAAAAACGACAAGATTGTCAAGCATTCCGTATTAACAGTGGATGT
AGAAAATTTTTTCAGATGGATAAAATGTATATGGTACAGATGTAAAGTTTTCTATGTAAA
AAATTCTGTACAACTTTCTGTACAATATTGATTCTCATCTGGCATATTCTAATCAGGTTA
CAGGTCAATAAAGTTTTTGGATTA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               119-353, - strand, RNAz p=0.997032
               

               
               657-771, - strand, RNAz p=0.792972
               

               
               1087-1206, + strand, RNAz p=0.524694

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-353, - strand, RNAz p=0.997032
               

               
               657-771, - strand, RNAz p=0.792972
               

               
               1087-1206, + strand, RNAz p=0.524694

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1129-1217, + strand, RNAmicro p=0.996413

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1129-1217, + strand, RNAmicro p=0.996413

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006421, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006421, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1224, gnl|bosTau2|chr14 (17911863-17913077)
               

               
               4-1224, gnl|Hg17|chr8 (68273657-68272467)
               

               
               4-1224, gnl|Mm7|chr1 (10281377-10280207)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1224, gnl|bosTau2|chr14 (17911863-17913077)
               

               
               4-1224, gnl|Hg17|chr8 (68273657-68272467)
               

               
               4-1224, gnl|Mm7|chr1 (10281377-10280207)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               cbe (0.478469)
               

               
               thg (0.380373)
               

               
               ill (0.351185)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               thg (0.380373)
               

               
               ill (0.351185)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	119-353, - strand, RNAz p=0.997032
	657-771, - strand, RNAz p=0.792972
	1087-1206, + strand, RNAz p=0.524694

	4-1224, gnl\|bosTau2\|chr14 (17911863-17913077)
	4-1224, gnl\|Hg17\|chr8 (68273657-68272467)
	4-1224, gnl\|Mm7\|chr1 (10281377-10280207)

	cbe (0.478469)
	thg (0.380373)
	ill (0.351185)
	ste (0.270416)
	lyg (0.266205)
	mgp (0.230681)
	spc (0.226732)
	cty (0.20816)
	cmu (0.186393)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	sin (0.174948)
	duo (0.172801)
	mcp (0.170648)
	fco (0.157208)
	isp (0.150376)
	ski (0.146735)
	pla (0.133672)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	jej (0.0989218)
	ldo (0.0970026)