Non-Coding RNA Search

Ss1.1-rthg31_c15.5

Sequence:


               
               AGCTATTTTTGCTTTTTATGTTTTTTATTGTTAAACTTGTATCCCTTTAAAAACTGAAGG
AAAATTTAAAAAAAAAAACAAAAAAAAACAAATCTAATGGTGCTTTTACCACAATATGTT
AACTACATTAAATGCTAATTAATTATTTTCTGTTATCAAAGCACATAAGTAAAATGAAAT
CATGGTATCTGTTAATTTTATAAGCTAGAAGTCACTATAATGGATTATGCCAATTCTGAA
AATTTTTACATGTATCCAGCAACATAGGATTTATCAGTTATCAGACACGTCATTGTACCA
GAGATTGTCCAGAAATTTTAAAGACCTTTGGGCCCCTGAACTGGGCTATGGGAAAATAAT
ATTAATAATAATAATGAAGCCAATATTGACACAAATGCTGGTGCCCATTCAGATCAAGGG
TACTTGTTAGGGAAAAAAAAAAGTTTTGCACCCCCAAAATATCCTGTATCTTATGTAAAA
AACAAACAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTATTTTTGCTTTTTATGTTTTTTATTGTTAAACTTGTATCCCTTTAAAAACTGAAGG
AAAATTTAAAAAAAAAAACAAAAAAAAACAAATCTAATGGTGCTTTTACCACAATATGTT
AACTACATTAAATGCTAATTAATTATTTTCTGTTATCAAAGCACATAAGTAAAATGAAAT
CATGGTATCTGTTAATTTTATAAGCTAGAAGTCACTATAATGGATTATGCCAATTCTGAA
AATTTTTACATGTATCCAGCAACATAGGATTTATCAGTTATCAGACACGTCATTGTACCA
GAGATTGTCCAGAAATTTTAAAGACCTTTGGGCCCCTGAACTGGGCTATGGGAAAATAAT
ATTAATAATAATAATGAAGCCAATATTGACACAAATGCTGGTGCCCATTCAGATCAAGGG
TACTTGTTAGGGAAAAAAAAAAGTTTTGCACCCCCAAAATATCCTGTATCTTATGTAAAA
AACAAACAAACA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-486, gnl|bosTau2|chr3 (56998323-56997845)
               

               
               1-486, gnl|Hg17|chr1 (61634003-61634497)
               

               
               1-486, gnl|Mm7|chr4 (97504921-97505442)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-486, gnl|bosTau2|chr3 (56998323-56997845)
               

               
               1-486, gnl|Hg17|chr1 (61634003-61634497)
               

               
               1-486, gnl|Mm7|chr4 (97504921-97505442)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               thg (0.253582)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-486, gnl\|bosTau2\|chr3 (56998323-56997845)
	1-486, gnl\|Hg17\|chr1 (61634003-61634497)
	1-486, gnl\|Mm7\|chr4 (97504921-97505442)

	thg (0.253582)
	mgm (0.180343)
	mcp (0.170648)
	fhi (0.169578)
	fat (0.147427)
	nca (0.136874)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)
	ldo (0.0970026)