Non-Coding RNA Search

Ss1.1-rthg31_h9.5

Sequence:


               
               GTTAAACAAGAATATAGTATTTCACCTGCTGATTTCTGCAGGAAACACAAAATGCCTCCA
CCACAAGCCTTCACTTGCAATACTGCTGATGCACCCAGTAAAGATATCTTTGTCAAACTG
ACAACAATGGCCATGTACCCCCATGCCCGGTTACGCTGTATGTGCACCTGCAACAGGTGT
ACATTTTGCATCTGTCAGAACTTCCTCAACTCAGACTTGCTGCAATCTGTAAAGAACAAA
ATCTTCTCTGCAGTTCTTAACAGGCACGTGACACAAGCTGACCTCAAGAGCTCCACGTTT
TGGCTTCGAGCAAGTTTTGGTGCTACTGTTTTTGCAGTTTTGGGCTTTGCTATGTACAAA
GCATTGTTGAAACAGCGATGATTAAAAAAATAATAATAATACTGGCCCTACCAAAAACAA
ATACTTTTATGTACATTCTGAATGCTTTAAATTCCGCTAGAAATATTGAGATATTTATAC
ATGCAGAATTCCTTTATTAATATTTGTAATTCATGCATAAGAGTATTTTAATGATAGTTA
TAACTGCAGTATTGACTAGCTTATGGGAGGAAACCGCTTAACAGCCAAACTAAAATGGCT
AAGTTTCAAAGGCCAAAAGGGAATATTTTGTAAATAATGTACATATTCAGGCAGGATACG
GGCTCCCAAACTGAGTTCTAGAAATTATGTTTCTAGGCGTTTCTACATGGTATTATTAGT
GCTCAGTTAGCTCACTCTCCTAGGTTTAGGTCCGCTCAGAGATCGTATTTACTCACTGAT
CACTTATTTATTTCGCACTTACTCAGAATGATCTTTGGGTACTTTAAGTACACGAGGCAC
AATTTGCCATTTTCTCTCCGTTTTTAAAAACATAACGTTCTTTCAGTCCTGTTCCTTGGG
GTAGGCCAGCCTTGAAGCCACCGTGCAGTCTGGAGACCTGTACAGCTGAGTGTGAGGCTC
TCCTTTAAGGAAGGCGTAAAAGCTGCAGGCTCTCAGCACAGGCGTCACCGGTGTGATTAC
GTTGCTTCCTTTGTTAGTATGTTGAATTTTGTAGCCCTTTCAATCAAATGAGGAAAAAGA
TTTGTATATTATCAATGTTTTTAGTTTAAATAAACAGTCACCATTGCTACTACTGAATTT
CCTCCCAAAGTGTAAATCATTCTATAATGGCTGTGTCTCTTCTAGTGTGTGACAGTAGCT
GCATGTGTCATGAAGTGTTCCGTATCTGGCTAGGATAACCTAGAAGCAGCACTTTTTTTA
AATGGTGAAATAAATCTAATGACTATAAACTCTCATGATAAACCTATTTTTTTCCATCAT
TGACCTTTTCAAGTATTTAAATAAATAACTGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAACAAGAATATAGTATTTCACCTGCTGATTTCTGCAGGAAACACAAAATGCCTCCA
CCACAAGCCTTCACTTGCAATACTGCTGATGCACCCAGTAAAGATATCTTTGTCAAACTG
ACAACAATGGCCATGTACCCCCATGCCCGGTTACGCTGTATGTGCACCTGCAACAGGTGT
ACATTTTGCATCTGTCAGAACTTCCTCAACTCAGACTTGCTGCAATCTGTAAAGAACAAA
ATCTTCTCTGCAGTTCTTAACAGGCACGTGACACAAGCTGACCTCAAGAGCTCCACGTTT
TGGCTTCGAGCAAGTTTTGGTGCTACTGTTTTTGCAGTTTTGGGCTTTGCTATGTACAAA
GCATTGTTGAAACAGCGATGATTAAAAAAATAATAATAATACTGGCCCTACCAAAAACAA
ATACTTTTATGTACATTCTGAATGCTTTAAATTCCGCTAGAAATATTGAGATATTTATAC
ATGCAGAATTCCTTTATTAATATTTGTAATTCATGCATAAGAGTATTTTAATGATAGTTA
TAACTGCAGTATTGACTAGCTTATGGGAGGAAACCGCTTAACAGCCAAACTAAAATGGCT
AAGTTTCAAAGGCCAAAAGGGAATATTTTGTAAATAATGTACATATTCAGGCAGGATACG
GGCTCCCAAACTGAGTTCTAGAAATTATGTTTCTAGGCGTTTCTACATGGTATTATTAGT
GCTCAGTTAGCTCACTCTCCTAGGTTTAGGTCCGCTCAGAGATCGTATTTACTCACTGAT
CACTTATTTATTTCGCACTTACTCAGAATGATCTTTGGGTACTTTAAGTACACGAGGCAC
AATTTGCCATTTTCTCTCCGTTTTTAAAAACATAACGTTCTTTCAGTCCTGTTCCTTGGG
GTAGGCCAGCCTTGAAGCCACCGTGCAGTCTGGAGACCTGTACAGCTGAGTGTGAGGCTC
TCCTTTAAGGAAGGCGTAAAAGCTGCAGGCTCTCAGCACAGGCGTCACCGGTGTGATTAC
GTTGCTTCCTTTGTTAGTATGTTGAATTTTGTAGCCCTTTCAATCAAATGAGGAAAAAGA
TTTGTATATTATCAATGTTTTTAGTTTAAATAAACAGTCACCATTGCTACTACTGAATTT
CCTCCCAAAGTGTAAATCATTCTATAATGGCTGTGTCTCTTCTAGTGTGTGACAGTAGCT
GCATGTGTCATGAAGTGTTCCGTATCTGGCTAGGATAACCTAGAAGCAGCACTTTTTTTA
AATGGTGAAATAAATCTAATGACTATAAACTCTCATGATAAACCTATTTTTTTCCATCAT
TGACCTTTTCAAGTATTTAAATAAATAACTGCTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7578921|gb|AAF64187.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7578921|gb|AAF64187.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               459-576, - strand, RNAz p=0.519668
               

               
               656-773, + strand, RNAz p=0.924788

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               459-576, - strand, RNAz p=0.519668
               

               
               656-773, + strand, RNAz p=0.924788

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC051818, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC051818, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-140, gnl|bosTau2|chr19 (12346575-12346714)
               

               
               1-140, gnl|canFam2|chr9 (44052214-44051957)
               

               
               1-140, gnl|danRer3|chrUn (34579269-34579531)
               

               
               1-140, gnl|dasNov1|scaffold_1277 (90854-90588)
               

               
               1-140, gnl|echTel1|scaffold_276949 (45989-46245)
               

               
               1-140, gnl|fr1|chrUn (86768944-86769167)
               

               
               1-140, gnl|galGal2|chr18 (6465114-6465371)
               

               
               1-140, gnl|hg17|chr17 (27559219-27559474)
               

               
               1-140, gnl|Hg17|chr17 (27559302-27559441)
               

               
               1-140, gnl|loxAfr1|scaffold_5126 (37761-38020)
               

               
               1-140, gnl|mm7|chr11 (80336214-80336471)
               

               
               1-140, gnl|Mm7|chr11 (80336298-80336437)
               

               
               1-140, gnl|monDom2|scaffold_44 (11616789-11616536)
               

               
               1-140, gnl|oryCun1|scaffold_115482 (15600-15343)
               

               
               1-140, gnl|panTro1|chr19 (31049391-31049646)
               

               
               1-140, gnl|rheMac2|chr16 (27549948-27550205)
               

               
               1-140, gnl|rn3|chr10 (68488947-68489204)
               

               
               1-140, gnl|tetNig1|chrUn_random (53724769-53724535)
               

               
               1-140, gnl|xenTro1|scaffold_667 (61319-61066)
               


               
               260-1356, gnl|bosTau2|chr19 (12363836-12364924)
               

               
               260-1356, gnl|Hg17|chr17 (27575744-27576851)
               

               
               260-1356, gnl|Mm7|chr11 (80347313-80348379)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-140, gnl|bosTau2|chr19 (12346575-12346714)
               

               
               1-140, gnl|canFam2|chr9 (44052214-44051957)
               

               
               1-140, gnl|danRer3|chrUn (34579269-34579531)
               

               
               1-140, gnl|dasNov1|scaffold_1277 (90854-90588)
               

               
               1-140, gnl|echTel1|scaffold_276949 (45989-46245)
               

               
               1-140, gnl|fr1|chrUn (86768944-86769167)
               

               
               1-140, gnl|galGal2|chr18 (6465114-6465371)
               

               
               1-140, gnl|hg17|chr17 (27559219-27559474)
               

               
               1-140, gnl|Hg17|chr17 (27559302-27559441)
               

               
               1-140, gnl|loxAfr1|scaffold_5126 (37761-38020)
               

               
               1-140, gnl|mm7|chr11 (80336214-80336471)
               

               
               1-140, gnl|Mm7|chr11 (80336298-80336437)
               

               
               1-140, gnl|monDom2|scaffold_44 (11616789-11616536)
               

               
               1-140, gnl|oryCun1|scaffold_115482 (15600-15343)
               

               
               1-140, gnl|panTro1|chr19 (31049391-31049646)
               

               
               1-140, gnl|rheMac2|chr16 (27549948-27550205)
               

               
               1-140, gnl|rn3|chr10 (68488947-68489204)
               

               
               1-140, gnl|tetNig1|chrUn_random (53724769-53724535)
               

               
               1-140, gnl|xenTro1|scaffold_667 (61319-61066)
               


               
               260-1356, gnl|bosTau2|chr19 (12363836-12364924)
               

               
               260-1356, gnl|Hg17|chr17 (27575744-27576851)
               

               
               260-1356, gnl|Mm7|chr11 (80347313-80348379)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               thg (0.380373)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	459-576, - strand, RNAz p=0.519668
	656-773, + strand, RNAz p=0.924788

	1-140, gnl\|bosTau2\|chr19 (12346575-12346714)
	1-140, gnl\|canFam2\|chr9 (44052214-44051957)
	1-140, gnl\|danRer3\|chrUn (34579269-34579531)
	1-140, gnl\|dasNov1\|scaffold_1277 (90854-90588)
	1-140, gnl\|echTel1\|scaffold_276949 (45989-46245)
	1-140, gnl\|fr1\|chrUn (86768944-86769167)
	1-140, gnl\|galGal2\|chr18 (6465114-6465371)
	1-140, gnl\|hg17\|chr17 (27559219-27559474)
	1-140, gnl\|Hg17\|chr17 (27559302-27559441)
	1-140, gnl\|loxAfr1\|scaffold_5126 (37761-38020)
	1-140, gnl\|mm7\|chr11 (80336214-80336471)
	1-140, gnl\|Mm7\|chr11 (80336298-80336437)
	1-140, gnl\|monDom2\|scaffold_44 (11616789-11616536)
	1-140, gnl\|oryCun1\|scaffold_115482 (15600-15343)
	1-140, gnl\|panTro1\|chr19 (31049391-31049646)
	1-140, gnl\|rheMac2\|chr16 (27549948-27550205)
	1-140, gnl\|rn3\|chr10 (68488947-68489204)
	1-140, gnl\|tetNig1\|chrUn_random (53724769-53724535)
	1-140, gnl\|xenTro1\|scaffold_667 (61319-61066)

	260-1356, gnl\|bosTau2\|chr19 (12363836-12364924)
	260-1356, gnl\|Hg17\|chr17 (27575744-27576851)
	260-1356, gnl\|Mm7\|chr11 (80347313-80348379)

	thg (0.380373)
	ret (0.257467)
	fcc (0.197785)
	ill (0.175593)
	fbs (0.175346)
	sin (0.174948)
	nje (0.16592)
	fco (0.157208)
	tbr (0.154178)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	spc (0.113366)