Non-Coding RNA Search

Ss1.1-rthg31_i1.5

Sequence:


               
               TGAAGATCAGATATTCATAAACTAAATACATAAAAGTGTTAACTATCACTGTCTCCTGAA
GTTGAGGTAGCAAAAAAAAAAAAAAAATGTTGTTGTGAGCTATGACTAAGAGGGCCTCTA
GAGCTCCCTGAGGTTGTCCTTATCTAGGACTAAAAATATCCTTGAAAGAATGAAAGCAAA
CATGTGGTGCTCCTCTGTTTTGAGCCCTTTACGTGTGTTACCCTCACAACAGCCATGAGG
TAAGTGCGTTATGAGGAAAGGAGATAAAGTAACCAGCTGAAAGGCACACAGTTACTATGT
GGGTTTGAACCCAGGGGTAGTGTGGCTCCAAAGTTGTTACTACTCTTCCAAAATATACTG
CTATATTCTCTACCCCTATATATCTCCAGGAGACATTCCACAACGTCTCTCAGTATTTCA
TTCTCATATGAATTTAAAAATTAATTTTACAAAGCCTTCTGGAAATCTATTTTCCATGTG
ACAGGATAACTTCCCCAAATTTCTCCAAAGTGTGTTTATATCGGTGTGCTAAAATGAAGT
AATTCTGAGTCACTCTAGGCACCCTATTGTGGTTTTACTGCGTAAGATGAAAATTAACTG
GAATGTTTGCTATACTTATATAATCAAACTTTACAAGCCATGAAAATTAATTGCACTCTC
TTTGTTGCTGAATGCCTAAGAAGTTTTCTTAAAAAAAAAAAAAAAATTTTAAAGGCACTG
TCAGATAATTTGGAGTTGAGTGATTTCTCCAGTTACTGTTTAACCTGCATAACCTTTTTT
TTGTCTTGAAGTTGTGTTTGTATAAGAAATAATCATTAGAAACATTTGGTAATGTACAAA
GTAGTCTATAATGACACTGTTCAGTACATTTTTATTTTTTGTTACATTCCACTTTTTGTA
AATATCCTCAGAAGCTTGATAATAAAATGTATTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGATCAGATATTCATAAACTAAATACATAAAAGTGTTAACTATCACTGTCTCCTGAA
GTTGAGGTAGCAAAAAAAAAAAAAAAATGTTGTTGTGAGCTATGACTAAGAGGGCCTCTA
GAGCTCCCTGAGGTTGTCCTTATCTAGGACTAAAAATATCCTTGAAAGAATGAAAGCAAA
CATGTGGTGCTCCTCTGTTTTGAGCCCTTTACGTGTGTTACCCTCACAACAGCCATGAGG
TAAGTGCGTTATGAGGAAAGGAGATAAAGTAACCAGCTGAAAGGCACACAGTTACTATGT
GGGTTTGAACCCAGGGGTAGTGTGGCTCCAAAGTTGTTACTACTCTTCCAAAATATACTG
CTATATTCTCTACCCCTATATATCTCCAGGAGACATTCCACAACGTCTCTCAGTATTTCA
TTCTCATATGAATTTAAAAATTAATTTTACAAAGCCTTCTGGAAATCTATTTTCCATGTG
ACAGGATAACTTCCCCAAATTTCTCCAAAGTGTGTTTATATCGGTGTGCTAAAATGAAGT
AATTCTGAGTCACTCTAGGCACCCTATTGTGGTTTTACTGCGTAAGATGAAAATTAACTG
GAATGTTTGCTATACTTATATAATCAAACTTTACAAGCCATGAAAATTAATTGCACTCTC
TTTGTTGCTGAATGCCTAAGAAGTTTTCTTAAAAAAAAAAAAAAAATTTTAAAGGCACTG
TCAGATAATTTGGAGTTGAGTGATTTCTCCAGTTACTGTTTAACCTGCATAACCTTTTTT
TTGTCTTGAAGTTGTGTTTGTATAAGAAATAATCATTAGAAACATTTGGTAATGTACAAA
GTAGTCTATAATGACACTGTTCAGTACATTTTTATTTTTTGTTACATTCCACTTTTTGTA
AATATCCTCAGAAGCTTGATAATAAAATGTATTTCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr11 (18840301-18839359)
               

               
               1-936, gnl|Hg17|chr2 (37390508-37389512)
               

               
               1-936, gnl|Mm7|chr17 (77250883-77249970)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr11 (18840301-18839359)
               

               
               1-936, gnl|Hg17|chr2 (37390508-37389512)
               

               
               1-936, gnl|Mm7|chr17 (77250883-77249970)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               thg (0.760746)
               

               
               mgp (0.692042)
               

               
               eye (0.341006)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.760746)
               

               
               mgp (0.692042)
               

               
               eye (0.341006)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	1-936, gnl\|bosTau2\|chr11 (18840301-18839359)
	1-936, gnl\|Hg17\|chr2 (37390508-37389512)
	1-936, gnl\|Mm7\|chr17 (77250883-77249970)

	thg (0.760746)
	mgp (0.692042)
	eye (0.341006)
	kid (0.259471)
	ova (0.258264)
	tra (0.246184)
	tes (0.207814)
	fbs (0.175346)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	pty (0.142714)
	pla (0.133672)
	sug (0.127291)
	bla (0.124347)
	ecc (0.115035)