Non-Coding RNA Search

Ss1.1-rthg31_m5.5

Sequence:


               
               AACAATGCAAAAAAAAAAAAAAAAAAAAAATCCTGAGTTTAAATATTAGCTCTATCACTC
ACATTAGCTGTGTAATTTTGGGATAAATTATTTAACTTTTCTAATGAACAGTTTCCTCAT
TTGTAAAATTGGAATATCACATGCCTTGGTGGGGTTACTGTAAGAATTAGAGAACAAAGT
AAGGGCATTAGCAAACGGTAAGTATTCAGTAAATGTTAGCCACTGCAAACAGTCTTATTA
TTTTTAACAAGACTGAAAATATCCTACCCGAAACAATGTTACATGTATTACATGGGGCAC
CAAACTGAGAGGGTTCTCAGTAACACTTGGAGTTAGCCTACGAATAACCAACCAACCATA
ATGATTAAAAAGAAACTGAGAAAAAGACAGGTGTTTGGGTCATTTAGTCAGCTGAGAGGA
CACTATAAGATTTAAGTTATGACAGAGAGAATGATGCTTACCTATATGTACATGGAGAAA
ACAACCCAGAGAGTGCTAATGAACATAATAATTGAATACATCACATCCTAGCACATTCAG
AAACAACCTCTTTGGGAGTTACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAATGCAAAAAAAAAAAAAAAAAAAAAATCCTGAGTTTAAATATTAGCTCTATCACTC
ACATTAGCTGTGTAATTTTGGGATAAATTATTTAACTTTTCTAATGAACAGTTTCCTCAT
TTGTAAAATTGGAATATCACATGCCTTGGTGGGGTTACTGTAAGAATTAGAGAACAAAGT
AAGGGCATTAGCAAACGGTAAGTATTCAGTAAATGTTAGCCACTGCAAACAGTCTTATTA
TTTTTAACAAGACTGAAAATATCCTACCCGAAACAATGTTACATGTATTACATGGGGCAC
CAAACTGAGAGGGTTCTCAGTAACACTTGGAGTTAGCCTACGAATAACCAACCAACCATA
ATGATTAAAAAGAAACTGAGAAAAAGACAGGTGTTTGGGTCATTTAGTCAGCTGAGAGGA
CACTATAAGATTTAAGTTATGACAGAGAGAATGATGCTTACCTATATGTACATGGAGAAA
ACAACCCAGAGAGTGCTAATGAACATAATAATTGAATACATCACATCCTAGCACATTCAG
AAACAACCTCTTTGGGAGTTACCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-303, + strand, RNAz p=0.663313

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-303, + strand, RNAz p=0.663313

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               25-556, gnl|bosTau2|chr26 (19483142-19483678)
               

               
               25-556, gnl|canFam2|chr28 (24623219-24623578)
               

               
               25-556, gnl|dasNov1|scaffold_41705 (3788-4157)
               

               
               25-556, gnl|hg17|chr10 (111991164-111991549)
               

               
               25-556, gnl|Hg17|chr10 (111991981-111991203)
               

               
               25-556, gnl|mm7|chr19 (53245471-53245764)
               

               
               25-556, gnl|monDom2|scaffold_14 (53108669-53108246)
               

               
               25-556, gnl|oryCun1|scaffold_202511 (90576-90952)
               

               
               25-556, gnl|panTro1|chr8 (113901346-113901731)
               

               
               25-556, gnl|rheMac2|chr9 (109932337-109932720)
               

               
               25-556, gnl|rn3|chr1 (259734334-259734711)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-556, gnl|bosTau2|chr26 (19483142-19483678)
               

               
               25-556, gnl|canFam2|chr28 (24623219-24623578)
               

               
               25-556, gnl|dasNov1|scaffold_41705 (3788-4157)
               

               
               25-556, gnl|hg17|chr10 (111991164-111991549)
               

               
               25-556, gnl|Hg17|chr10 (111991981-111991203)
               

               
               25-556, gnl|mm7|chr19 (53245471-53245764)
               

               
               25-556, gnl|monDom2|scaffold_14 (53108669-53108246)
               

               
               25-556, gnl|oryCun1|scaffold_202511 (90576-90952)
               

               
               25-556, gnl|panTro1|chr8 (113901346-113901731)
               

               
               25-556, gnl|rheMac2|chr9 (109932337-109932720)
               

               
               25-556, gnl|rn3|chr1 (259734334-259734711)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.253582)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)

	25-556, gnl\|bosTau2\|chr26 (19483142-19483678)
	25-556, gnl\|canFam2\|chr28 (24623219-24623578)
	25-556, gnl\|dasNov1\|scaffold_41705 (3788-4157)
	25-556, gnl\|hg17\|chr10 (111991164-111991549)
	25-556, gnl\|Hg17\|chr10 (111991981-111991203)
	25-556, gnl\|mm7\|chr19 (53245471-53245764)
	25-556, gnl\|monDom2\|scaffold_14 (53108669-53108246)
	25-556, gnl\|oryCun1\|scaffold_202511 (90576-90952)
	25-556, gnl\|panTro1\|chr8 (113901346-113901731)
	25-556, gnl\|rheMac2\|chr9 (109932337-109932720)
	25-556, gnl\|rn3\|chr1 (259734334-259734711)