Non-Coding RNA Search

Ss1.1-rthg32_h24.5

Sequence:


               
               AGAGATGTTGTTAAGAGAAAGCAATAGCGCTCGGCTGTTGCAATGGTTGTGATCTTTTCT
TGAGGGCCTTGCCTTCTTATATAGTGTCGATTAGTATTTTCCTAATAAGTATAATTTTGA
GGGAAAGTTAATTAATTTTTGGCCCAATACGTACATGTAAATATACATATTGTTGTGTTT
GTGATACAGTGAGGAAATATATATAGAAATACATAGAGTTGTATAGAGAGATACCCTTCT
GCCTGGGCTGTTTTCATCTTTCTGAAGGATGCTTTACAGGAAGATTCTCAGTCTCCTTTT
ATTTAATAACCAACTTCAAACAATATCACACCCAAAACACCAGTTGTGTCAAGTTCTAGC
AATGGTAATGAACTTAATATTAGTGTTGGTTCTGAAGCCATACCCTTCTCATATGAACAT
CCACCTATTTGAAAACTCAGATAAGATTAAAATATCTGAGGACCTTAATGAAGGAAGTAG
GTACAAACCATAGTTAATCCCTGTGTCGCTGAAGAACAGTAAAAGAAAATTGTTTTGAAG
TTCCTCATGAAACTATCATTTCTCAAAAATGAGCACATCCAATGATATTGAATGATCAGT
ATTATCTATAAGACAGACAAATATGAAAAAACCTTACCCAATCTGTAGTCAAATCCTAAT
CATGATAATTTGATTCTTATAAGTCTAAACTAAGATATATTTGCATTTTTAAATATTTTG
CTTTATCCTTCAGGATCAGGTTAAATTCCTGTGGTCCTATGAATGTTATCTTTCCTTTTG
ATTGGCTTTTTTTCTCAGCTATTACTCAAAGGATCAAATGGTCGTTTACCTTCAAAAGTC
AAAATTCATTTGTCATAAAAATAAAGATGTAGGTGTTCTCTATTTTTGCAAACTTCTTGA
AAAATTTTTAAAGTCACTAATATTGTCTGTTACCCATGAAACTTAGTTTTCTTACTGGAG
TTGTTTTATTTCTTTTCTATAAGCCTAAAAAATAAAAGTTTTGTATTGTGCATTTTGGTA
ACCTGGAAAGGACAGTTCAAAGAATCATTTGGCTTGTAATAATGGTCTCTGCTTTCTCGG
GTTTGAAGTACATAATTGTAATACTTTTTCTAGTTATTGCATTTGTATTTGTTCAAAGTA
TTGGCTATTTTTTATAACATTCTTTGGAAGTTTTTCCTTTACTGATGGGAAGCAGATTTT
TTTTTGCACTATTAAAGTAAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGATGTTGTTAAGAGAAAGCAATAGCGCTCGGCTGTTGCAATGGTTGTGATCTTTTCT
TGAGGGCCTTGCCTTCTTATATAGTGTCGATTAGTATTTTCCTAATAAGTATAATTTTGA
GGGAAAGTTAATTAATTTTTGGCCCAATACGTACATGTAAATATACATATTGTTGTGTTT
GTGATACAGTGAGGAAATATATATAGAAATACATAGAGTTGTATAGAGAGATACCCTTCT
GCCTGGGCTGTTTTCATCTTTCTGAAGGATGCTTTACAGGAAGATTCTCAGTCTCCTTTT
ATTTAATAACCAACTTCAAACAATATCACACCCAAAACACCAGTTGTGTCAAGTTCTAGC
AATGGTAATGAACTTAATATTAGTGTTGGTTCTGAAGCCATACCCTTCTCATATGAACAT
CCACCTATTTGAAAACTCAGATAAGATTAAAATATCTGAGGACCTTAATGAAGGAAGTAG
GTACAAACCATAGTTAATCCCTGTGTCGCTGAAGAACAGTAAAAGAAAATTGTTTTGAAG
TTCCTCATGAAACTATCATTTCTCAAAAATGAGCACATCCAATGATATTGAATGATCAGT
ATTATCTATAAGACAGACAAATATGAAAAAACCTTACCCAATCTGTAGTCAAATCCTAAT
CATGATAATTTGATTCTTATAAGTCTAAACTAAGATATATTTGCATTTTTAAATATTTTG
CTTTATCCTTCAGGATCAGGTTAAATTCCTGTGGTCCTATGAATGTTATCTTTCCTTTTG
ATTGGCTTTTTTTCTCAGCTATTACTCAAAGGATCAAATGGTCGTTTACCTTCAAAAGTC
AAAATTCATTTGTCATAAAAATAAAGATGTAGGTGTTCTCTATTTTTGCAAACTTCTTGA
AAAATTTTTAAAGTCACTAATATTGTCTGTTACCCATGAAACTTAGTTTTCTTACTGGAG
TTGTTTTATTTCTTTTCTATAAGCCTAAAAAATAAAAGTTTTGTATTGTGCATTTTGGTA
ACCTGGAAAGGACAGTTCAAAGAATCATTTGGCTTGTAATAATGGTCTCTGCTTTCTCGG
GTTTGAAGTACATAATTGTAATACTTTTTCTAGTTATTGCATTTGTATTTGTTCAAAGTA
TTGGCTATTTTTTATAACATTCTTTGGAAGTTTTTCCTTTACTGATGGGAAGCAGATTTT
TTTTTGCACTATTAAAGTAAGTTT

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-218, gnl|bosTau2|chr10 (27243414-27243636)
               

               
               1-218, gnl|Hg17|chr15 (38742144-38742977)
               

               
               1-218, gnl|Mm7|chr2 (118846076-118846297)
               


               
               255-419, gnl|bosTau2|chr10 (27243643-27243801)
               

               
               255-419, gnl|Hg17|chr15 (38743010-38743174)
               


               
               552-1224, gnl|bosTau2|chr10 (27243787-27244489)
               

               
               552-1224, gnl|Hg17|chr15 (38743161-38743821)
               

               
               552-1224, gnl|Mm7|chr2 (118846648-118847322)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr10 (27243414-27243636)
               

               
               1-218, gnl|Hg17|chr15 (38742144-38742977)
               

               
               1-218, gnl|Mm7|chr2 (118846076-118846297)
               


               
               255-419, gnl|bosTau2|chr10 (27243643-27243801)
               

               
               255-419, gnl|Hg17|chr15 (38743010-38743174)
               


               
               552-1224, gnl|bosTau2|chr10 (27243787-27244489)
               

               
               552-1224, gnl|Hg17|chr15 (38743161-38743821)
               

               
               552-1224, gnl|Mm7|chr2 (118846648-118847322)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               ova (0.258264)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.258264)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

	1-218, gnl\|bosTau2\|chr10 (27243414-27243636)
	1-218, gnl\|Hg17\|chr15 (38742144-38742977)
	1-218, gnl\|Mm7\|chr2 (118846076-118846297)

	255-419, gnl\|bosTau2\|chr10 (27243643-27243801)
	255-419, gnl\|Hg17\|chr15 (38743010-38743174)

	552-1224, gnl\|bosTau2\|chr10 (27243787-27244489)
	552-1224, gnl\|Hg17\|chr15 (38743161-38743821)
	552-1224, gnl\|Mm7\|chr2 (118846648-118847322)

	ova (0.258264)
	liv (0.146284)
	ret (0.128733)
	thg (0.126791)
	eje (0.0988338)