Non-Coding RNA Search

Ss1.1-rthg32_p21.5

Sequence:


               
               ATGATGGATTAACAAGAACATTGAAATTCTGTGAAAAGTTTTAAATTGGAGCATATTGAA
TTTTCACCCTAGTCCAGCAGCTCTGCTGCTCACTTAAATACAGATGAATGAAGACCCCAT
TCGGGAAGACACCTGGCCAGCGGTCCAGAGCTGATGCAGGCCATGCTGGTGTATCTGCAA
GCATGATGAAGAAGCGGACATCCCACAAAAAACATCGGAGCAGTGTGGGGCCAAGCAAAC
CTGTTTCCCAGCCCCGGCGGAACATCGTAGGCTGCAGGATTCAGCATGGGTGGAAAGAGG
GGAATGGCCCTGTCACCCAGTGGAAAGGAACCGTGCTGGACCAGGTGCCTGTAAATCCTT
CTTTGTATCTTATAAAATACGATGGATTTGACTGTGTTTATGGACTAGAACTTAATAAAG
ATGAAAGAGTTTCTGCGCTTGAAGTCCTCCCTGATAGAGTTGCAACATCTCGAATCAGTG
ATGCACACCTAGCAGACACAATGATTGGCAAAGCAGTGGAGCACATGTTTGAGACCGAGG
ATGGCTCTAAAGACGAGTGGAGGGGAATGGTCTTAGCACGCGCTCCCATAATGAACACGT
GGTTTTACATCACCTATGAAAAAGATCCTGTCTTATACATGTACCAGCTCTTAGATGATT
ATAAAGAAGGCGATCTTCGCATTATGCCTGATTCTAATGATTCACCTCCAGCAGAAAGGG
AACCAGGAGAAGTTGTGGACAGCCTGGTAGGCAAACAAGTGGAATATGCCAAAGAAGATG
GCTCTAAAAGGACTGGCATGGTCATTCATCAAGTAGAAGCCAAACCATCTGTCTATTTCA
TCAAGTTTGATGATGATTTCCATATTTATGTCTACGATTTGGTGAAAACATCCTAGATGT
CATCATGAACTTTGCCAAATTTGTGGAACTATTAAATGTATAATTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATGGATTAACAAGAACATTGAAATTCTGTGAAAAGTTTTAAATTGGAGCATATTGAA
TTTTCACCCTAGTCCAGCAGCTCTGCTGCTCACTTAAATACAGATGAATGAAGACCCCAT
TCGGGAAGACACCTGGCCAGCGGTCCAGAGCTGATGCAGGCCATGCTGGTGTATCTGCAA
GCATGATGAAGAAGCGGACATCCCACAAAAAACATCGGAGCAGTGTGGGGCCAAGCAAAC
CTGTTTCCCAGCCCCGGCGGAACATCGTAGGCTGCAGGATTCAGCATGGGTGGAAAGAGG
GGAATGGCCCTGTCACCCAGTGGAAAGGAACCGTGCTGGACCAGGTGCCTGTAAATCCTT
CTTTGTATCTTATAAAATACGATGGATTTGACTGTGTTTATGGACTAGAACTTAATAAAG
ATGAAAGAGTTTCTGCGCTTGAAGTCCTCCCTGATAGAGTTGCAACATCTCGAATCAGTG
ATGCACACCTAGCAGACACAATGATTGGCAAAGCAGTGGAGCACATGTTTGAGACCGAGG
ATGGCTCTAAAGACGAGTGGAGGGGAATGGTCTTAGCACGCGCTCCCATAATGAACACGT
GGTTTTACATCACCTATGAAAAAGATCCTGTCTTATACATGTACCAGCTCTTAGATGATT
ATAAAGAAGGCGATCTTCGCATTATGCCTGATTCTAATGATTCACCTCCAGCAGAAAGGG
AACCAGGAGAAGTTGTGGACAGCCTGGTAGGCAAACAAGTGGAATATGCCAAAGAAGATG
GCTCTAAAAGGACTGGCATGGTCATTCATCAAGTAGAAGCCAAACCATCTGTCTATTTCA
TCAAGTTTGATGATGATTTCCATATTTATGTCTACGATTTGGTGAAAACATCCTAGATGT
CATCATGAACTTTGCCAAATTTGTGGAACTATTAAATGTATAATTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R997_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R997_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               280-399, - strand, RNAz p=0.677189
               

               
               753-872, + strand, RNAz p=0.513029

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, - strand, RNAz p=0.677189
               

               
               753-872, + strand, RNAz p=0.513029

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-948, gnl|bosTau2|chr14 (46407428-46408360)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-948, gnl|bosTau2|chr14 (46407428-46408360)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ldo (0.194005)
               

               
               mcp (0.170648)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)
               

               
               mcp (0.170648)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

	280-399, - strand, RNAz p=0.677189
	753-872, + strand, RNAz p=0.513029