Ss1.1-rthg34_g19.5
|
TAATTCCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTTGCTTGTCTTGTGAA
GGATTTCTACCCTAAAGATATAAAAATAAGTCTGGAATCATCCAAGAAAATAACAGAATA
TGACCCTGCTATCGTGGTCTCTCCCACTGGGAAGTACAGTGCCGTCAAGCTTGGTCAGTA
TGGAGATCCAGATGCAGTCACATGTTCAGTTCAACACGACCAAAAAACCTTGCACTCTGC
TGACTTCGAACCAAAGAAAAATTCTTCAGAGACTCCAAAACCAAAGGAATCTGAAAATGT
TAAGCAAACTTCGGAGATCTGCTATGAGCCCCAAGTTCAAGCCTGGAAGGTGAATATGAT
GTCTGTCACAGTGCTTGGGTTCCGAATGCTGTTTGCCAAGAGCGTTGCCGTCAATTTTCT
CTTGACTGCCAAGTTATTTTTCTTTTAAGGCTGACTGGCATGAGAAGCCTACACTCCCTG
AAAGAAACCAAAAGCGTACAGAGCTGTTTCCTCTTAGGCTTTCAACGTCTTGGTGATTCA
AGTTGAACCATCCCAGCCTTGTTTAAATGGCTGCTACCCAAACCTGTTTTCCTTTAAAGG
CAGCAAACCCAGCTTATCCTTCAGCCTGGTGGAAAGACAGAAGTTCTGGGCAATGAGGGC
CTATGGTCCCAAATGCTTTATGTGCTGCTTTATAAAGGGATATAGAGATATGAAGGTATA
TAGGATTCATTTTTTTTTCCTTCCTAAGGCTGATATACTTTGAAAATGGTGTTTTGTTCC
TTTGACATCTTTGCCTCCAGAAATAGAAGCTATTGCATTCCCAGCTCCATTCTCCAAGAG
GGAAATAGATCCTGGAGAAAGAAGGGCAGATGTCCTTTCACCTAAACATAAAAGGCTCTG
CTAACCCAGCACAAGATTTGCCCCAAACTAATGTTTTCTTCCACAAAGGTATCTTCTGCT
TTTCCTAGTACTTCACAGACAGAACTACATTTGACTTCCCTAATACTCTGTGCAGGCATG
AGCTTTCTAAAATCTCATTTAAATACTCTCAGAGCTCTTAGCAGAGATCAGGGTAAGATG
CAGAGGAAATGTGCTTCTCTCTATTAATTGATTTAACAAACAGGGATTACTCCAGGTTTT
AGGCACCATGCTGAGGGTGCAAAAATGAGTAATACATGGGAATTGCTTTAAAGCAACTGA
CTGTGCAAGTATTTTTGGAGGAAGGGACAGAAATGAGACCCTGTGATTTCCCCCATAAAA
AGTGTCTTTACCACCCCTTGCCTGCCCATCTGTGCACAGGGCATTTGAGGGTTTTGGATC
TTGGGTGTTGATAGTTTTCTGCCATTCTTCTCTGTCTCTGTTGCATTGATTAAAGTGCAT
TGTGGGTGCCTGCTTCTGTCTTTACTCATTTCAGACCACCGAAGGGGGAAAGTGCAAGCT
GTGAATTCATTGGTAGGCAAACAAAAAACAGACCGAGCTCATAGGTCACACCGCAGCTTC
CTGAGCCCTCAGCCTGCAGGCTCCTGCTTCGGGGAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TAATTCCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTTGCTTGTCTTGTGAA
GGATTTCTACCCTAAAGATATAAAAATAAGTCTGGAATCATCCAAGAAAATAACAGAATA
TGACCCTGCTATCGTGGTCTCTCCCACTGGGAAGTACAGTGCCGTCAAGCTTGGTCAGTA
TGGAGATCCAGATGCAGTCACATGTTCAGTTCAACACGACCAAAAAACCTTGCACTCTGC
TGACTTCGAACCAAAGAAAAATTCTTCAGAGACTCCAAAACCAAAGGAATCTGAAAATGT
TAAGCAAACTTCGGAGATCTGCTATGAGCCCCAAGTTCAAGCCTGGAAGGTGAATATGAT
GTCTGTCACAGTGCTTGGGTTCCGAATGCTGTTTGCCAAGAGCGTTGCCGTCAATTTTCT
CTTGACTGCCAAGTTATTTTTCTTTTAAGGCTGACTGGCATGAGAAGCCTACACTCCCTG
AAAGAAACCAAAAGCGTACAGAGCTGTTTCCTCTTAGGCTTTCAACGTCTTGGTGATTCA
AGTTGAACCATCCCAGCCTTGTTTAAATGGCTGCTACCCAAACCTGTTTTCCTTTAAAGG
CAGCAAACCCAGCTTATCCTTCAGCCTGGTGGAAAGACAGAAGTTCTGGGCAATGAGGGC
CTATGGTCCCAAATGCTTTATGTGCTGCTTTATAAAGGGATATAGAGATATGAAGGTATA
TAGGATTCATTTTTTTTTCCTTCCTAAGGCTGATATACTTTGAAAATGGTGTTTTGTTCC
TTTGACATCTTTGCCTCCAGAAATAGAAGCTATTGCATTCCCAGCTCCATTCTCCAAGAG
GGAAATAGATCCTGGAGAAAGAAGGGCAGATGTCCTTTCACCTAAACATAAAAGGCTCTG
CTAACCCAGCACAAGATTTGCCCCAAACTAATGTTTTCTTCCACAAAGGTATCTTCTGCT
TTTCCTAGTACTTCACAGACAGAACTACATTTGACTTCCCTAATACTCTGTGCAGGCATG
AGCTTTCTAAAATCTCATTTAAATACTCTCAGAGCTCTTAGCAGAGATCAGGGTAAGATG
CAGAGGAAATGTGCTTCTCTCTATTAATTGATTTAACAAACAGGGATTACTCCAGGTTTT
AGGCACCATGCTGAGGGTGCAAAAATGAGTAATACATGGGAATTGCTTTAAAGCAACTGA
CTGTGCAAGTATTTTTGGAGGAAGGGACAGAAATGAGACCCTGTGATTTCCCCCATAAAA
AGTGTCTTTACCACCCCTTGCCTGCCCATCTGTGCACAGGGCATTTGAGGGTTTTGGATC
TTGGGTGTTGATAGTTTTCTGCCATTCTTCTCTGTCTCTGTTGCATTGATTAAAGTGCAT
TGTGGGTGCCTGCTTCTGTCTTTACTCATTTCAGACCACCGAAGGGGGAAAGTGCAAGCT
GTGAATTCATTGGTAGGCAAACAAAAAACAGACCGAGCTCATAGGTCACACCGCAGCTTC
CTGAGCCCTCAGCCTGCAGGCTCCTGCTTCGGGGAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
6-269, gnl|bosTau2|chr10 (14552709-14552446) |
|
6-269, gnl|canFam2|chr8 (5867202-5867589) |
|
6-269, gnl|dasNov1|scaffold_523 (17009-17397) |
|
6-269, gnl|echTel1|scaffold_325371 (113809-114188) |
|
6-269, gnl|hg17|chr14 (22001698-22002088) |
|
6-269, gnl|Hg17|chr14 (22001779-22002042) |
|
6-269, gnl|loxAfr1|scaffold_30277 (32588-32201) |
|
6-269, gnl|mm7|chr14 (49012602-49012957) |
|
6-269, gnl|Mm7|chr14 (49012675-49012939) |
|
6-269, gnl|monDom2|scaffold_12 (27604935-27604577) |
|
6-269, gnl|oryCun1|scaffold_212960 (47219-47596) |
|
6-269, gnl|panTro1|chr15 (20943676-20944066) |
|
6-269, gnl|rheMac2|chr7 (85272380-85272770) |
|
6-269, gnl|rn3|chr15 (32206670-32207047) |
| |
|
432-1514, gnl|bosTau2|chr10 (14549370-14548304) |
|
432-1514, gnl|Hg17|chr14 (22004348-22005537) |
|
432-1514, gnl|Mm7|chr14 (49015256-49016415) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
6-269, gnl|bosTau2|chr10 (14552709-14552446) |
|
6-269, gnl|canFam2|chr8 (5867202-5867589) |
|
6-269, gnl|dasNov1|scaffold_523 (17009-17397) |
|
6-269, gnl|echTel1|scaffold_325371 (113809-114188) |
|
6-269, gnl|hg17|chr14 (22001698-22002088) |
|
6-269, gnl|Hg17|chr14 (22001779-22002042) |
|
6-269, gnl|loxAfr1|scaffold_30277 (32588-32201) |
|
6-269, gnl|mm7|chr14 (49012602-49012957) |
|
6-269, gnl|Mm7|chr14 (49012675-49012939) |
|
6-269, gnl|monDom2|scaffold_12 (27604935-27604577) |
|
6-269, gnl|oryCun1|scaffold_212960 (47219-47596) |
|
6-269, gnl|panTro1|chr15 (20943676-20944066) |
|
6-269, gnl|rheMac2|chr7 (85272380-85272770) |
|
6-269, gnl|rn3|chr15 (32206670-32207047) |
| |
|
432-1514, gnl|bosTau2|chr10 (14549370-14548304) |
|
432-1514, gnl|Hg17|chr14 (22004348-22005537) |
|
432-1514, gnl|Mm7|chr14 (49015256-49016415) |
|
med (0.697512) |
|
fty (0.351679) |
|
jej (0.296765) |
|
spl (0.286369) |
|
thg (0.253582) |
|
cbl (0.229595) |
|
ill (0.175593) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
lin (0.145603) |
|
clu (0.119646) |
|
cty (0.10408) |
|
med (0.697512) |
|
fty (0.351679) |
|
jej (0.296765) |
|
spl (0.286369) |
|
thg (0.253582) |
|
cbl (0.229595) |
|
ill (0.175593) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
lin (0.145603) |
|
clu (0.119646) |
|
cty (0.10408) |
