Non-Coding RNA Search

Ss1.1-rthg34_k13.5

Sequence:


               
               AGTCCCAGCAGGCAGATGTAGGTGGCCTGGCCCCTTCCCAACCAACTCCCCGGGACTCAT
CCCAGCCCTCCATCAAGCAGAGGCTGGCACAGCTACAGCTGTCACCGGATTTTACCTTCA
CTGCTGGCCTCGCTGCAGAAGTGGCTGCTAGATCTCTCTCCTTTGCCACCATGCAGGAAC
AGACTTTTGGTGATGAGGAGGAAGAACAAATAATACAAGAAAATAAAAATGAGGTAGAAG
AAAAGTAAGAGCCAAGATTTACATGAAGGATTTTAAATGGCTGGGGTTTTTTTGTTTGTT
TGTTTGGTTTTTGTTTTTTTGGTTTTTTTTTTTTTTTTTTGGTGAAAGTATTTTAACTTC
AAGACTAGCTATTCCACTGGAAAGGGAAATGAGTGTAAGTTTACTGTATTTTTAAAGCTA
AGATGTGAATTTACAGGAAGAACCCTGGTTTGAACAACTGATCTGAAAATAGTAGTTACC
TATAAATGGCAGATTTTTAGGAAAATAAGAGAAAGGTAAGGGCTCTTTTGAATAAACTGC
TGTTTTATTTGCAGCATACCTGATTGATCTTAGAAATTCTTTAAGTATCTTTAATAACAA
ATGAATTTATCATTTCTTGCCAGAATTTACTACCATAAAATGACTGGGATAATTCTGTTG
CAAGAACATCTACATTTAGTATGACTCATTTTTACTGTATTCTGGCAGTTAATAACTGCA
GCTATTATGTCAGTAACAAGTTGTTTGTATTTTATTTTTGTTTATACCTGTCGTAAAACA
AAAATACACGTTCTGAATAAAAAAAATTGAATTCATGCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCCAGCAGGCAGATGTAGGTGGCCTGGCCCCTTCCCAACCAACTCCCCGGGACTCAT
CCCAGCCCTCCATCAAGCAGAGGCTGGCACAGCTACAGCTGTCACCGGATTTTACCTTCA
CTGCTGGCCTCGCTGCAGAAGTGGCTGCTAGATCTCTCTCCTTTGCCACCATGCAGGAAC
AGACTTTTGGTGATGAGGAGGAAGAACAAATAATACAAGAAAATAAAAATGAGGTAGAAG
AAAAGTAAGAGCCAAGATTTACATGAAGGATTTTAAATGGCTGGGGTTTTTTTGTTTGTT
TGTTTGGTTTTTGTTTTTTTGGTTTTTTTTTTTTTTTTTTGGTGAAAGTATTTTAACTTC
AAGACTAGCTATTCCACTGGAAAGGGAAATGAGTGTAAGTTTACTGTATTTTTAAAGCTA
AGATGTGAATTTACAGGAAGAACCCTGGTTTGAACAACTGATCTGAAAATAGTAGTTACC
TATAAATGGCAGATTTTTAGGAAAATAAGAGAAAGGTAAGGGCTCTTTTGAATAAACTGC
TGTTTTATTTGCAGCATACCTGATTGATCTTAGAAATTCTTTAAGTATCTTTAATAACAA
ATGAATTTATCATTTCTTGCCAGAATTTACTACCATAAAATGACTGGGATAATTCTGTTG
CAAGAACATCTACATTTAGTATGACTCATTTTTACTGTATTCTGGCAGTTAATAACTGCA
GCTATTATGTCAGTAACAAGTTGTTTGTATTTTATTTTTGTTTATACCTGTCGTAAAACA
AAAATACACGTTCTGAATAAAAAAAATTGAATTCATGCAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               41-160, - strand, RNAz p=0.956523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.956523

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-275, gnl|bosTau2|chr5 (17293216-17292942)
               

               
               1-275, gnl|Hg17|chr12 (94196673-94196945)
               

               
               1-275, gnl|Mm7|chr10 (93529342-93529072)
               


               
               387-835, gnl|bosTau2|chr10 (31648389-31648827)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-275, gnl|bosTau2|chr5 (17293216-17292942)
               

               
               1-275, gnl|Hg17|chr12 (94196673-94196945)
               

               
               1-275, gnl|Mm7|chr10 (93529342-93529072)
               


               
               387-835, gnl|bosTau2|chr10 (31648389-31648827)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               mgm (0.360685)
               

               
               fce (0.271592)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.360685)
               

               
               fce (0.271592)
               

               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	1-275, gnl\|bosTau2\|chr5 (17293216-17292942)
	1-275, gnl\|Hg17\|chr12 (94196673-94196945)
	1-275, gnl\|Mm7\|chr10 (93529342-93529072)

	387-835, gnl\|bosTau2\|chr10 (31648389-31648827)

	mgm (0.360685)
	fce (0.271592)
	sin (0.174948)
	cki (0.165235)
	bfe (0.149858)
	lyg (0.133103)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	spc (0.113366)