Non-Coding RNA Search

Ss1.1-rthg35_a19.5

Sequence:


               
               ACAGTATGCAGACTGTAGTTCTTGACTGGTGGCTTTAATCCATGATTGTTAGTCATGTCC
TCGGACACTCTCAAGTGTTGAAAGTCTTCAACTTGCAGTAGAAAGAAGAAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGCTTTGAGAAAATCCAGGTTCAGTGCCGTCTTTTGAG
ACTCTCACTCCAGCCTTTGTGTCCTGTTCTTAGAAACAGCAGGTACCTGGTGGCGGGTGA
GAAGCCTAGTGGGAGAGAAGGGAAGGGACCAAAAAATGGGCATATCACATTGTATTGTAG
ACATACTTTATAAGTACGTTTCTTATTTGCTTCTTATTCAGGCAGAGATTATAAAAGTTT
CATGCAAGAATCCAGACCAAGATTTGTGTTTTGGCCGTGATCAGAATACCTGCAGGGAAA
GGACACAAACCACAAAAACAAAAAACAAACAAACAAAAAGCCAACCTCGACTATGAGCAC
TCTTTACACCTAAACCAATATTTTTATCATTCTTTTATTTGTTTTGGCTCTGTCACAAAT
TAAAGTGCTTGGAATGCTGTAGTCTGTGGTCTCTTGAAATTTAATCAATGAGAACCTAAC
ACTTTCACAGTATGCTGTCACTTTGGACTTTCATAATAAAAGTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTATGCAGACTGTAGTTCTTGACTGGTGGCTTTAATCCATGATTGTTAGTCATGTCC
TCGGACACTCTCAAGTGTTGAAAGTCTTCAACTTGCAGTAGAAAGAAGAAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGCTTTGAGAAAATCCAGGTTCAGTGCCGTCTTTTGAG
ACTCTCACTCCAGCCTTTGTGTCCTGTTCTTAGAAACAGCAGGTACCTGGTGGCGGGTGA
GAAGCCTAGTGGGAGAGAAGGGAAGGGACCAAAAAATGGGCATATCACATTGTATTGTAG
ACATACTTTATAAGTACGTTTCTTATTTGCTTCTTATTCAGGCAGAGATTATAAAAGTTT
CATGCAAGAATCCAGACCAAGATTTGTGTTTTGGCCGTGATCAGAATACCTGCAGGGAAA
GGACACAAACCACAAAAACAAAAAACAAACAAACAAAAAGCCAACCTCGACTATGAGCAC
TCTTTACACCTAAACCAATATTTTTATCATTCTTTTATTTGTTTTGGCTCTGTCACAAAT
TAAAGTGCTTGGAATGCTGTAGTCTGTGGTCTCTTGAAATTTAATCAATGAGAACCTAAC
ACTTTCACAGTATGCTGTCACTTTGGACTTTCATAATAAAAGTTGAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               126-648, gnl|bosTau2|chr9 (54234198-54233704)
               

               
               126-648, gnl|Hg17|chr6 (155321610-155322111)
               

               
               126-648, gnl|Mm7|chr17 (3258617-3259122)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-648, gnl|bosTau2|chr9 (54234198-54233704)
               

               
               126-648, gnl|Hg17|chr6 (155321610-155322111)
               

               
               126-648, gnl|Mm7|chr17 (3258617-3259122)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               thg (0.253582)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)

	126-648, gnl\|bosTau2\|chr9 (54234198-54233704)
	126-648, gnl\|Hg17\|chr6 (155321610-155322111)
	126-648, gnl\|Mm7\|chr17 (3258617-3259122)