Non-Coding RNA Search

Ss1.1-rthg35_a4.5

Sequence:


               
               CGCTCTGCCTTTGGGTCATCAGTTTGCTGTCTCTGTCTCTGTACTGGGATCGGAATCACA
GTTACATTCTCCAGAGGCCAACTTAATTAACTCTATGATTAATTAGGATCAGTTAGCCAA
ACTTGTAACCTCTTTGTCCAGCCTTGATTTACAATGCAGGGTGGGTCACAGACCTTGGAA
GAAAGGTAACTGAATACATACACAGATAAGCTCCCTGCGAGTGTAAATATTAAAGATGAC
TTGTGCAAAATTGTACCCACACCAGCACTAGTAGAAACGGTTCTAAATTATTGCCAAAAA
AAGGTTTTGCTTTTTTTTTTAATCTTCTGTGTCATTCAAGTTTACAGAAAGGAAAGCAGT
AAATACTATGTTGTCATTTTATTATGTACATCTGTCATGTACATTCAAAGAAGCTGTGTG
ACAAGATTTATCAATGTAAAAACAAGGTATATTACTTATTTTTCAAAAAAAAAAAGTTGT
AGTCAATTTTATCCTGTAAAGCCTATTTCTGTATTTATAGATTTTAAACATGGTGATTTT
TTTTCTATTACAAGTTTATTTAAAACTGCTTTGTTTCTTCAGTTGTTATTGATTTGGCGA
GTGAATGAACCTGCTGCAGATAGAAACAGAGAAAAGCCGAGAAAGGTTGTTTGATGGTGG
GGAAAAGAATGAATCATTCTTTGCAGGAGCCATCAGCCACTTTGGCCAGCCTGTTGAGAA
AAGTCTGTCAAGGGCTGGCCTATGGGAAGAAAGTCAATGAATGTTTTCATGAAATGAATG
TTTTTGTATACTGGCCTTAAACTTTTCTGGAAGCATTTCAAATAAATTACATTAAAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTCTGCCTTTGGGTCATCAGTTTGCTGTCTCTGTCTCTGTACTGGGATCGGAATCACA
GTTACATTCTCCAGAGGCCAACTTAATTAACTCTATGATTAATTAGGATCAGTTAGCCAA
ACTTGTAACCTCTTTGTCCAGCCTTGATTTACAATGCAGGGTGGGTCACAGACCTTGGAA
GAAAGGTAACTGAATACATACACAGATAAGCTCCCTGCGAGTGTAAATATTAAAGATGAC
TTGTGCAAAATTGTACCCACACCAGCACTAGTAGAAACGGTTCTAAATTATTGCCAAAAA
AAGGTTTTGCTTTTTTTTTTAATCTTCTGTGTCATTCAAGTTTACAGAAAGGAAAGCAGT
AAATACTATGTTGTCATTTTATTATGTACATCTGTCATGTACATTCAAAGAAGCTGTGTG
ACAAGATTTATCAATGTAAAAACAAGGTATATTACTTATTTTTCAAAAAAAAAAAGTTGT
AGTCAATTTTATCCTGTAAAGCCTATTTCTGTATTTATAGATTTTAAACATGGTGATTTT
TTTTCTATTACAAGTTTATTTAAAACTGCTTTGTTTCTTCAGTTGTTATTGATTTGGCGA
GTGAATGAACCTGCTGCAGATAGAAACAGAGAAAAGCCGAGAAAGGTTGTTTGATGGTGG
GGAAAAGAATGAATCATTCTTTGCAGGAGCCATCAGCCACTTTGGCCAGCCTGTTGAGAA
AAGTCTGTCAAGGGCTGGCCTATGGGAAGAAAGTCAATGAATGTTTTCATGAAATGAATG
TTTTTGTATACTGGCCTTAAACTTTTCTGGAAGCATTTCAAATAAATTACATTAAAATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               646-751, - strand, RNAz p=0.78448

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               646-751, - strand, RNAz p=0.78448

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-837, gnl|bosTau2|chr22 (32662853-32662030)
               

               
               2-837, gnl|Hg17|chr3 (56737305-56736493)
               

               
               2-837, gnl|Mm7|chr14 (24835865-24836675)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-837, gnl|bosTau2|chr22 (32662853-32662030)
               

               
               2-837, gnl|Hg17|chr3 (56737305-56736493)
               

               
               2-837, gnl|Mm7|chr14 (24835865-24836675)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               sug (0.381874)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	2-837, gnl\|bosTau2\|chr22 (32662853-32662030)
	2-837, gnl\|Hg17\|chr3 (56737305-56736493)
	2-837, gnl\|Mm7\|chr14 (24835865-24836675)

	sug (0.381874)
	cmu (0.186393)
	gul (0.177588)
	sin (0.174948)
	fhi (0.169578)
	ski (0.146735)
	csk (0.140746)
	kid (0.129735)
	thg (0.126791)
	bla (0.124347)
	jca (0.11396)