Ss1.1-rthg35_c16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCGAGAATATCATGAAAGGCTTCAGACCTTTTTGATGTGGTTTATTGAAACTGCTAGT TTTATTGACGTGGATGATGAAAGATGGCACTACTTTCTAGTATTTGAGAAGTATAATAAG GATGGAGCTACACTCTTTGCGACCGTAGGCTACATGACAGTCTATAATTACTATGTGTAC CCAGACAAAACCCGGCCACGTGTAAGTCAGATGCTGATATTGACTCCATTTCAAGGTCAA GGCCATGGTGCTCAACTTCTTGAAACAGTTCATAGATACTACATTGCATCTCCTTCTGTT CTTGATATTACAGCGGAAGATCCATCCAAAAGCTATGTGAAATTAAGAGACTTTGTGCTT GTGAAGTTTTGTCAAGGTTTGCCTTGTTTTTCCCGGGAAAAGTTAATGCAAGGATTCAAT GAAGATATGGCAGTAGAGGCTCAACAGAAGTTCAAAATAAATAAGCAACATGCTAGACGG GTTTATGAGATTCTTCGACTACTGGTAACTGACATGAGTGATGCTGAACAATACAGAAGC TATAGACTGGATATTAAAAGAAGACTAATTAGCCCATATAAGAAAAAACAGAGAGATCTT GCTAAAATGAGGAAATGTCTCAGACCAGAAGAACTGACAAACCAGATGAACCAAATAGAA ATAAGCATGCAACATGAACAGCTGGAAGAAAGCTTTCAAGAACTTGTGGAAGATTATCGA CGTGTTATTGAACGCCTCGCTCAAGAGTAGAGATTTATATACATCTGTGTACAGGAAGTT TGCAAATTTCTGTACATGTGTTGTGAAATCAGATGATGACTTTAATTTTAAAATCTTGTA ACATTTTACTTACGTTAAAAGTTATCTATCTTTAGTTGAATATTTTCTTTTGGAGAGATT GTATATTTTAAAATACTGTTTAGAGTCTATGAGCATATATTACATTAAAAAAGAGCTTCT GAAATACCACTGCAGTTACTTCCCTTCTTAAACAGTATAATAAATGCTTAGTTGTGGTAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCGAGAATATCATGAAAGGCTTCAGACCTTTTTGATGTGGTTTATTGAAACTGCTAGT TTTATTGACGTGGATGATGAAAGATGGCACTACTTTCTAGTATTTGAGAAGTATAATAAG GATGGAGCTACACTCTTTGCGACCGTAGGCTACATGACAGTCTATAATTACTATGTGTAC CCAGACAAAACCCGGCCACGTGTAAGTCAGATGCTGATATTGACTCCATTTCAAGGTCAA GGCCATGGTGCTCAACTTCTTGAAACAGTTCATAGATACTACATTGCATCTCCTTCTGTT CTTGATATTACAGCGGAAGATCCATCCAAAAGCTATGTGAAATTAAGAGACTTTGTGCTT GTGAAGTTTTGTCAAGGTTTGCCTTGTTTTTCCCGGGAAAAGTTAATGCAAGGATTCAAT GAAGATATGGCAGTAGAGGCTCAACAGAAGTTCAAAATAAATAAGCAACATGCTAGACGG GTTTATGAGATTCTTCGACTACTGGTAACTGACATGAGTGATGCTGAACAATACAGAAGC TATAGACTGGATATTAAAAGAAGACTAATTAGCCCATATAAGAAAAAACAGAGAGATCTT GCTAAAATGAGGAAATGTCTCAGACCAGAAGAACTGACAAACCAGATGAACCAAATAGAA ATAAGCATGCAACATGAACAGCTGGAAGAAAGCTTTCAAGAACTTGTGGAAGATTATCGA CGTGTTATTGAACGCCTCGCTCAAGAGTAGAGATTTATATACATCTGTGTACAGGAAGTT TGCAAATTTCTGTACATGTGTTGTGAAATCAGATGATGACTTTAATTTTAAAATCTTGTA ACATTTTACTTACGTTAAAAGTTATCTATCTTTAGTTGAATATTTTCTTTTGGAGAGATT GTATATTTTAAAATACTGTTTAGAGTCTATGAGCATATATTACATTAAAAAAGAGCTTCT GAAATACCACTGCAGTTACTTCCCTTCTTAAACAGTATAATAAATGCTTAGTTGTGGTAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 1-101, gnl|bosTau2|chr2 (17691845-17691745) | |
| 1-101, gnl|canFam2|chr36 (19370532-19370694) | |
| 1-101, gnl|danRer3|chr9 (7272407-7272251) | |
| 1-101, gnl|dasNov1|scaffold_88530 (8934-8772) | |
| 1-101, gnl|echTel1|scaffold_226856 (5642-5804) | |
| 1-101, gnl|fr1|chrUn (7317825-7318003) | |
| 1-101, gnl|galGal2|chr7 (18637296-18637134) | |
| 1-101, gnl|hg17|chr2 (172647781-172647943) | |
| 1-101, gnl|Hg17|chr2 (172647836-172647936) | |
| 1-101, gnl|loxAfr1|scaffold_31647 (25770-25932) | |
| 1-101, gnl|mm7|chr2 (71264266-71264428) | |
| 1-101, gnl|Mm7|chr2 (71264321-71264421) | |
| 1-101, gnl|monDom2|scaffold_2 (70734098-70734260) | |
| 1-101, gnl|oryCun1|scaffold_205040 (41172-41328) | |
| 1-101, gnl|panTro1|chr13 (62291059-62291221) | |
| 1-101, gnl|rheMac2|chr12 (35606783-35606945) | |
| 1-101, gnl|rn3|chr3 (53621929-53622091) | |
| 1-101, gnl|tetNig1|chr2 (11432742-11432594) | |
| 1-101, gnl|xenTro1|scaffold_65 (1814288-1814126) | |
| 102-206, gnl|bosTau2|chr2 (17691244-17691140) | |
| 102-206, gnl|canFam2|chr36 (19371189-19371291) | |
| 102-206, gnl|danRer3|chr9 (7268756-7268654) | |
| 102-206, gnl|dasNov1|scaffold_88530 (8277-8175) | |
| 102-206, gnl|echTel1|scaffold_226856 (6253-6325) | |
| 102-206, gnl|fr1|chrUn (7318589-7318691) | |
| 102-206, gnl|galGal2|chr7 (18636639-18636537) | |
| 102-206, gnl|hg17|chr2 (172648438-172648540) | |
| 102-206, gnl|Hg17|chr2 (172648437-172648541) | |
| 102-206, gnl|loxAfr1|scaffold_31647 (26427-26529) | |
| 102-206, gnl|mm7|chr2 (71264922-71265024) | |
| 102-206, gnl|Mm7|chr2 (71264921-71265025) | |
| 102-206, gnl|monDom2|scaffold_2 (70734755-70734857) | |
| 102-206, gnl|oryCun1|scaffold_205040 (41329-41431) | |
| 102-206, gnl|panTro1|chr13 (62291716-62291818) | |
| 102-206, gnl|rheMac2|chr12 (35607440-35607542) | |
| 102-206, gnl|rn3|chr3 (53622585-53622687) | |
| 102-206, gnl|tetNig1|chr2 (11431983-11431881) | |
| 102-206, gnl|xenTro1|scaffold_65 (1813625-1813523) | |
| 312-465, gnl|bosTau2|chr2 (17683879-17683726) | |
| 312-465, gnl|canFam2|chr36 (19383542-19383641) | |
| 312-465, gnl|danRer3|chr9 (7263720-7263621) | |
| 312-465, gnl|dasNov1|scaffold_22562 (13468-13370) | |
| 312-465, gnl|echTel1|scaffold_292025 (40508-40605) | |
| 312-465, gnl|fr1|chrUn (7319312-7319411) | |
| 312-465, gnl|galGal2|chr7 (18633701-18633604) | |
| 312-465, gnl|hg17|chr2 (172666600-172666699) | |
| 312-465, gnl|Hg17|chr2 (172666601-172666754) | |
| 312-465, gnl|mm7|chr2 (71277763-71277861) | |
| 312-465, gnl|Mm7|chr2 (71277763-71277916) | |
| 312-465, gnl|monDom2|scaffold_2 (70740099-70740198) | |
| 312-465, gnl|oryCun1|scaffold_205040 (41539-41636) | |
| 312-465, gnl|panTro1|chr13 (62309846-62309945) | |
| 312-465, gnl|rheMac2|chr12 (35626854-35626953) | |
| 312-465, gnl|rn3|chr3 (53632968-53633066) | |
| 312-465, gnl|tetNig1|chr2 (11431328-11431229) | |
| 312-465, gnl|xenTro1|scaffold_65 (1799844-1799746) | |
| 813-1032, gnl|bosTau2|chr27 (18642807-18642583) | |
| 813-1032, gnl|Hg17|chr2 (172673835-172674052) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-101, gnl|bosTau2|chr2 (17691845-17691745) | |
| 1-101, gnl|canFam2|chr36 (19370532-19370694) | |
| 1-101, gnl|danRer3|chr9 (7272407-7272251) | |
| 1-101, gnl|dasNov1|scaffold_88530 (8934-8772) | |
| 1-101, gnl|echTel1|scaffold_226856 (5642-5804) | |
| 1-101, gnl|fr1|chrUn (7317825-7318003) | |
| 1-101, gnl|galGal2|chr7 (18637296-18637134) | |
| 1-101, gnl|hg17|chr2 (172647781-172647943) | |
| 1-101, gnl|Hg17|chr2 (172647836-172647936) | |
| 1-101, gnl|loxAfr1|scaffold_31647 (25770-25932) | |
| 1-101, gnl|mm7|chr2 (71264266-71264428) | |
| 1-101, gnl|Mm7|chr2 (71264321-71264421) | |
| 1-101, gnl|monDom2|scaffold_2 (70734098-70734260) | |
| 1-101, gnl|oryCun1|scaffold_205040 (41172-41328) | |
| 1-101, gnl|panTro1|chr13 (62291059-62291221) | |
| 1-101, gnl|rheMac2|chr12 (35606783-35606945) | |
| 1-101, gnl|rn3|chr3 (53621929-53622091) | |
| 1-101, gnl|tetNig1|chr2 (11432742-11432594) | |
| 1-101, gnl|xenTro1|scaffold_65 (1814288-1814126) | |
| 102-206, gnl|bosTau2|chr2 (17691244-17691140) | |
| 102-206, gnl|canFam2|chr36 (19371189-19371291) | |
| 102-206, gnl|danRer3|chr9 (7268756-7268654) | |
| 102-206, gnl|dasNov1|scaffold_88530 (8277-8175) | |
| 102-206, gnl|echTel1|scaffold_226856 (6253-6325) | |
| 102-206, gnl|fr1|chrUn (7318589-7318691) | |
| 102-206, gnl|galGal2|chr7 (18636639-18636537) | |
| 102-206, gnl|hg17|chr2 (172648438-172648540) | |
| 102-206, gnl|Hg17|chr2 (172648437-172648541) | |
| 102-206, gnl|loxAfr1|scaffold_31647 (26427-26529) | |
| 102-206, gnl|mm7|chr2 (71264922-71265024) | |
| 102-206, gnl|Mm7|chr2 (71264921-71265025) | |
| 102-206, gnl|monDom2|scaffold_2 (70734755-70734857) | |
| 102-206, gnl|oryCun1|scaffold_205040 (41329-41431) | |
| 102-206, gnl|panTro1|chr13 (62291716-62291818) | |
| 102-206, gnl|rheMac2|chr12 (35607440-35607542) | |
| 102-206, gnl|rn3|chr3 (53622585-53622687) | |
| 102-206, gnl|tetNig1|chr2 (11431983-11431881) | |
| 102-206, gnl|xenTro1|scaffold_65 (1813625-1813523) | |
| 312-465, gnl|bosTau2|chr2 (17683879-17683726) | |
| 312-465, gnl|canFam2|chr36 (19383542-19383641) | |
| 312-465, gnl|danRer3|chr9 (7263720-7263621) | |
| 312-465, gnl|dasNov1|scaffold_22562 (13468-13370) | |
| 312-465, gnl|echTel1|scaffold_292025 (40508-40605) | |
| 312-465, gnl|fr1|chrUn (7319312-7319411) | |
| 312-465, gnl|galGal2|chr7 (18633701-18633604) | |
| 312-465, gnl|hg17|chr2 (172666600-172666699) | |
| 312-465, gnl|Hg17|chr2 (172666601-172666754) | |
| 312-465, gnl|mm7|chr2 (71277763-71277861) | |
| 312-465, gnl|Mm7|chr2 (71277763-71277916) | |
| 312-465, gnl|monDom2|scaffold_2 (70740099-70740198) | |
| 312-465, gnl|oryCun1|scaffold_205040 (41539-41636) | |
| 312-465, gnl|panTro1|chr13 (62309846-62309945) | |
| 312-465, gnl|rheMac2|chr12 (35626854-35626953) | |
| 312-465, gnl|rn3|chr3 (53632968-53633066) | |
| 312-465, gnl|tetNig1|chr2 (11431328-11431229) | |
| 312-465, gnl|xenTro1|scaffold_65 (1799844-1799746) | |
| 813-1032, gnl|bosTau2|chr27 (18642807-18642583) | |
| 813-1032, gnl|Hg17|chr2 (172673835-172674052) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| isp (0.75188) | |
| thg (0.633955) | |
| liv (0.585137) | |
| sag (0.548145) | |
| mgm (0.541028) | |
| mgp (0.461361) | |
| ski (0.440205) | |
| tes (0.415628) | |
| aor (0.390549) | |
| ret (0.3862) | |
| tra (0.369276) | |
| lnt (0.284616) | |
| sug (0.254582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.75188) | |
| thg (0.633955) | |
| liv (0.585137) | |
| sag (0.548145) | |
| mgm (0.541028) | |
| mgp (0.461361) | |
| ski (0.440205) | |
| tes (0.415628) | |
| aor (0.390549) | |
| ret (0.3862) | |
| tra (0.369276) | |
| lnt (0.284616) | |
| sug (0.254582) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| spc (0.113366) |