Non-Coding RNA Search

Ss1.1-rthg35_c6.5

Sequence:


               
               AAAAAAAAAAAAAAAAAAAAAAAAAAAGGCAGGGGAAACACATTGTCCCCAGAGGTAAAG
GCTGCTATTTTATTTTATTTTATTCTTTCGGCCTGGACTTACGACCTGAAAATTGGCAAG
CGCTAACTCTCCATGGCCTTTACTTGTGCTACGTGATAACGTTTTCTCCTTGGAACACCG
TAGGCCTTTTTCCTCAACATATCTCTGTAATTTCTTTCTAAAGGTTTCAAATAAACTTCA
GTGTGTTCATTTAGTTCTTTTAAAGTTGTTATTTTAATATTGTATGTGTATCAATATTTT
CATTCCTAATGTGAAAAAATTGAATTATTTATACTTATTATAGAAAGCATTTGAAATTTG
CACATTTAGTTATCTCTCATAGAAAACAGTTGACTTTGTGTTGGCTTTCTTCAAGTTTTC
CTAAATTTGAATGTAAATTTTCACATAAGTCAAAATTTATAAATAAATTATTTAAGAACA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAAAAAAAAAGGCAGGGGAAACACATTGTCCCCAGAGGTAAAG
GCTGCTATTTTATTTTATTTTATTCTTTCGGCCTGGACTTACGACCTGAAAATTGGCAAG
CGCTAACTCTCCATGGCCTTTACTTGTGCTACGTGATAACGTTTTCTCCTTGGAACACCG
TAGGCCTTTTTCCTCAACATATCTCTGTAATTTCTTTCTAAAGGTTTCAAATAAACTTCA
GTGTGTTCATTTAGTTCTTTTAAAGTTGTTATTTTAATATTGTATGTGTATCAATATTTT
CATTCCTAATGTGAAAAAATTGAATTATTTATACTTATTATAGAAAGCATTTGAAATTTG
CACATTTAGTTATCTCTCATAGAAAACAGTTGACTTTGTGTTGGCTTTCTTCAAGTTTTC
CTAAATTTGAATGTAAATTTTCACATAAGTCAAAATTTATAAATAAATTATTTAAGAACA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               16-482, gnl|bosTau2|chr9 (44145239-44144787)
               

               
               16-482, gnl|Hg17|chr6 (138245697-138246144)
               

               
               16-482, gnl|Mm7|chr10 (18722987-18722596)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-482, gnl|bosTau2|chr9 (44145239-44144787)
               

               
               16-482, gnl|Hg17|chr6 (138245697-138246144)
               

               
               16-482, gnl|Mm7|chr10 (18722987-18722596)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               thg (0.507164)
               

               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               cly (0.120642)

	16-482, gnl\|bosTau2\|chr9 (44145239-44144787)
	16-482, gnl\|Hg17\|chr6 (138245697-138246144)
	16-482, gnl\|Mm7\|chr10 (18722987-18722596)

	thg (0.507164)
	fce (0.271592)
	fty (0.17584)
	csk (0.140746)
	cst (0.140036)
	ova (0.129132)
	cly (0.120642)