Non-Coding RNA Search

Ss1.1-rthg35_g11.5

Sequence:


               
               TCACTGACAACAAAACAAAAACAGAAACTTCTCAGGAAGCTGGATCGACTTGAGAAGAAA
AACACCCAAAAAGAAAAAAGATAGAAAAAAGAAAAAGCTTCAGAAGAGCAGAAGTAAACA
CAAAAAACATAAAAACAAATCCTCTTCCTCTTCCTCCTCCTCCTCCTCTTCCTCCTCTAG
TGAGACTTCAGAAAGCAGCAGTGAGAGTGACAACAAAGAAAAAAACATACAAAAGAAGAA
AAGAAAGAAAAACAAGCATTCAGGGCATAACAGCAGTGATTCTGACGAAGAGATCGACAA
GTCTAAGAAGAGAAAACTTGATGAAGAGCGTTCTGGCAGTCACAGTAACAAGGAAAAGCC
CAGATCTTTCAAACAAGAGAGTTCTGGGGAGAATGGCAAATGGAGCCATTCTGATTCTGA
CCGAAAGCCCAGAAGCTATAACCAGAGTCCAGAGAAGAGAGGATCGGGAAGAGACGAGAG
GAGAAACAGGAGCCAGAGCAGGGATGAGAGGAATAGGAGAAGCCGAAGCAGAAGTCACGG
TAGCTACAAGCCAAAAGAAATAAGAAAACGGTCACGGCGAAGTCCCAGTGAAGAGCGGAA
GAGAGGAAACGACACCAGAAGCCATGGCACAGATATATACAGAGGGGGGAAAACGCCCAG
AGAGCACTAGGGAGATAAGCATACTAGAGTGACGCCAAGAGAACGAAGCAGAAATAGAGA
ATAAGGAGAGAATTGTATATGACAATTCCCTGGAAAGAAAAATATCTCCACTTTCTTCTT
GAATACCTTTAGTAAGGGCTAAATTATGTACTATTGTCTTTTTAATAAAAAAAACCTCTA
TTTTAATTTTCCATCTCTATAAGCTGTCATATCAAGTACAAAACTACATGAATCCTATAA
GAATGAAATTGCAAATATTTGTAAGTGATCTTTGAAAATATGAGCTGTAAAAATATTTTC
TGTTGATAAATATTTCTTGTGCCCTATACTAAGATAAAAAACCCCATATAAGTGTGACAT
TTTCTTTGTTCCGAAACATCATTAAAAGAATGAGAGTATAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTGACAACAAAACAAAAACAGAAACTTCTCAGGAAGCTGGATCGACTTGAGAAGAAA
AACACCCAAAAAGAAAAAAGATAGAAAAAAGAAAAAGCTTCAGAAGAGCAGAAGTAAACA
CAAAAAACATAAAAACAAATCCTCTTCCTCTTCCTCCTCCTCCTCCTCTTCCTCCTCTAG
TGAGACTTCAGAAAGCAGCAGTGAGAGTGACAACAAAGAAAAAAACATACAAAAGAAGAA
AAGAAAGAAAAACAAGCATTCAGGGCATAACAGCAGTGATTCTGACGAAGAGATCGACAA
GTCTAAGAAGAGAAAACTTGATGAAGAGCGTTCTGGCAGTCACAGTAACAAGGAAAAGCC
CAGATCTTTCAAACAAGAGAGTTCTGGGGAGAATGGCAAATGGAGCCATTCTGATTCTGA
CCGAAAGCCCAGAAGCTATAACCAGAGTCCAGAGAAGAGAGGATCGGGAAGAGACGAGAG
GAGAAACAGGAGCCAGAGCAGGGATGAGAGGAATAGGAGAAGCCGAAGCAGAAGTCACGG
TAGCTACAAGCCAAAAGAAATAAGAAAACGGTCACGGCGAAGTCCCAGTGAAGAGCGGAA
GAGAGGAAACGACACCAGAAGCCATGGCACAGATATATACAGAGGGGGGAAAACGCCCAG
AGAGCACTAGGGAGATAAGCATACTAGAGTGACGCCAAGAGAACGAAGCAGAAATAGAGA
ATAAGGAGAGAATTGTATATGACAATTCCCTGGAAAGAAAAATATCTCCACTTTCTTCTT
GAATACCTTTAGTAAGGGCTAAATTATGTACTATTGTCTTTTTAATAAAAAAAACCTCTA
TTTTAATTTTCCATCTCTATAAGCTGTCATATCAAGTACAAAACTACATGAATCCTATAA
GAATGAAATTGCAAATATTTGTAAGTGATCTTTGAAAATATGAGCTGTAAAAATATTTTC
TGTTGATAAATATTTCTTGTGCCCTATACTAAGATAAAAAACCCCATATAAGTGTGACAT
TTTCTTTGTTCCGAAACATCATTAAAAGAATGAGAGTATAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               140-251, - strand, RNAz p=0.999988
               

               
               357-476, - strand, RNAz p=0.642685

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-251, - strand, RNAz p=0.999988
               

               
               357-476, - strand, RNAz p=0.642685

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               150-288, - strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               150-288, - strand, RNAmicro p=1

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               140-1024, gnl|bosTau2|chr2 (14386429-14385552)
               

               
               140-1024, gnl|Hg17|chr2 (175039292-175038413)
               

               
               140-1024, gnl|Mm7|chr2 (73128615-73127716)
               


               
               607-1016, gnl|bosTau2|chr13 (40460748-40460345)
               

               
               607-1016, gnl|Hg17|chr2 (175038831-175038436)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-1024, gnl|bosTau2|chr2 (14386429-14385552)
               

               
               140-1024, gnl|Hg17|chr2 (175039292-175038413)
               

               
               140-1024, gnl|Mm7|chr2 (73128615-73127716)
               


               
               607-1016, gnl|bosTau2|chr13 (40460748-40460345)
               

               
               607-1016, gnl|Hg17|chr2 (175038831-175038436)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               ski (0.440205)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               cki (0.330469)
               

               
               liv (0.292569)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.440205)
               

               
               tes (0.415628)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               cki (0.330469)
               

               
               liv (0.292569)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	140-251, - strand, RNAz p=0.999988
	357-476, - strand, RNAz p=0.642685

	140-1024, gnl\|bosTau2\|chr2 (14386429-14385552)
	140-1024, gnl\|Hg17\|chr2 (175039292-175038413)
	140-1024, gnl\|Mm7\|chr2 (73128615-73127716)

	607-1016, gnl\|bosTau2\|chr13 (40460748-40460345)
	607-1016, gnl\|Hg17\|chr2 (175038831-175038436)

	ski (0.440205)
	tes (0.415628)
	aor (0.390549)
	cmu (0.372787)
	sag (0.36543)
	gul (0.355177)
	cki (0.330469)
	liv (0.292569)
	sug (0.254582)
	thg (0.253582)
	spc (0.226732)
	fcc (0.197785)
	fbs (0.175346)
	nco (0.161734)
	tbr (0.154178)
	bfe (0.149858)
	csk (0.140746)
	kid (0.129735)
	ret (0.128733)
	pgl (0.118483)
	jca (0.11396)
	ldo (0.0970026)