Ss1.1-rthg35_g18.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGATCTGCTAGCACACACGAGGAGGGTTGAGCCGTTGCTGCCGCCGCGGTCGTCGTT GCGAGTGCGAAGCCGGGATTAAAGGTGCTGCCGCGACGACGCCGGAGATTGTGTAGTTAG CTCTCCCAGCCTCTCTGCCTCGCAGCTTCCCGGGCTCAGCGCGGCCTGCTCCACCCCGGC CCATCGCCCCCGCCTCCATTTCCCGCCCTCTCTTCACCACACACACGGCCCCCCCGATCA TGGATCCGGGCAGTGGTGGCGGCGGCGGTGGCGGAGGAGGTGGGAGCAGCAGCGGCAGCA GCAGCAGCGACTCGGCACCGGATTGCTGGGACCAGGCGGACATGGAAGCCCCCGGACCGG GACCGTGCGGCGGCGCCGGCGGCCCTTTGGCAGCGGCGGCGGCCGAGGCCCAGCGTGAGC ACCTCAGCGCGGCCTTCAGCCGGCAACTCAACGTCAACGCCAAGCCCTTCGTGCCCAACG TCCACGCCGCGGAGTTCGTGCCGTCCTTCCTGCGGGGCCCGGCCCAGCCGTCAGCACCCC CAGCTGGCGCCGCCGCCAACAACCACGGAGCCGGCAGCGGCGCGGGAGGCCCTTCGGCAC CTGTGGAACCTTCTCAAGAGGAGCAGTCATTGTTGTGTGAAGGTTCAAATTCAGCTGTTA GCATGGAACTTTCAGAACCTGTTGTAGAAAATGGGGAGACAGAAATGTCCCCAGAAGAAT CATGGGAGCACAAAGAAGAAATAAGTGAAGCAGAGACAGGGGTTGGTCCCTTGGGAGATG GAAGGCCCACAGAGGAAAGTGCCCAGGAAATGATGGAGGAGGAAGAAGAAATACCAAAAC CCAAGTCTGTGGTTGCACCGCCAGGTGCTCCTAAGAAAGAACATGTAAATGTCGTGTTCA TTGGGCACGTAGATGCTGGCAAGTCAACCATAGGAGGACAAATAATGTATTTGACTGGAA TGGTTGACAAAAGGACACTTGAAAAATATGAAAGAGAAGCTAAAGAAAAAAACAGAGAAA CTTGGTACCTGTCTTGGGCCCTAGACACAAATCAGGAAGAACGAGACAAGGGTAAAACAG TAGAAGTGGGTCGTGCCTATTTTGAAACAGAAAAGAAGCATTTTACAATTCTTGATGCCC CTGGCCACAAGAGTTTTGTCCCAAATATGATTGGTGGTGCTTCTCAAGCTGATTTGGCTG TACTGGTAATCTCTGCCAGGAAAGGAGAGTTTGAAACTGGATTTGAAAAAGGAGGACAAA CAAGAGAACATGCAATGTTGGCAAAAACAGCAGGCGTAAAACACTTAATTGTGCTTATTA ATAAAATGGATGATCCAACAGTAAATTGGAGCAATGAGAGATATGAAGAATGTAAAGAGA AACTAGTGCCATTTTTGAAAAAAGTTGGCTTCAATCCCAAAAAGGACATTCACTTCATGC CCTGCTCAGGACTGACTGGAGCAAATCTTAAAGAGCAATCAGATTTCTGTCCTTGGTACA TTGGATTACCATTTATTCCATATCTGGATAATTTGCAAACTTCAATAGATCAGTTGATGG ACCAATCAGGCTGCCAATTGTGGACAAGTACAAGGATATGGGCACTGTGGTCCTGGGAAA GCTGGAATCAGGATCTATTTGTAAAGGCCAGCAGCTTGTGATGATGCCAAACAAGCACAA TGTGGAAGTTCTTGGAATCCTTTCCGATGATGTAGAAACTGATTCTGTAGCCCCAGGTGA AAACCTCAAAATCAGACTGAAAGGAATTGAAGAGGAGGAGATTCTTCCAGGGTTCATACT TTGTGATCCTAATAATCTTTGTCATTCTGGTCGCACATTTGATGCCCAGATAGTGATTAT AGAGCACAAGTCCATCATCTGCCCAGGCTATAACGCGGTGCTGCATATCCATACCTGTAT TGAAGAAGTCGAAATAACAGCCTTAATCTGCTTGGTAGACAAAAAATCAGGAGAAAAAAG TAAGACTCGACCCCGTTTTGTGAAACAAGATCAAGTATGCATTGCTCGCTTAAGGACAGC AGGAACCATCTGCCTTGAGACCTTTAAAGACTTCCCTCAGATGGGCCGTTTTACCTTAAG AGATGAGGGTAAGACCATTGCAATTGGGAAAGTTCTGAAACTGGTTCCAGAGAAAGACTA AGCATTGTCTTGATGACCCTGCACAATACTGTGAGGAAAATTGACTGCAAAAGCCTACTT CACACCGCCTTCTCTTATTTTCTGCCCATTGACAAACCTCTCCCCGTATTTTGCAAAGAC AAAATCCACAGCAAAAGTCCACATTATGTCAGCTTTCTCATATTGAGAGCTCTGCTATGC CACTGTTGAATTTTTCCCAAGATTTTTTTCTTCCCTTTCAAACTCTGCTTCCTTGGACAG ATTTGGCAATAGCTTTGTAAGTGATGTGGACATAATTGCCTACAATAATGAAAACCTACT AGGAATTTTTTTATTTTTCCATTTTCCCCTTAGGCATACTTAGTCTCTTTTTTTCCCTAG GCAGATCATTCTGAGTGTGCGAGTGTGTGTGCACATGTTACAAAGACAACTACCATGTTA ATAAAATATTCAATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGATCTGCTAGCACACACGAGGAGGGTTGAGCCGTTGCTGCCGCCGCGGTCGTCGTT GCGAGTGCGAAGCCGGGATTAAAGGTGCTGCCGCGACGACGCCGGAGATTGTGTAGTTAG CTCTCCCAGCCTCTCTGCCTCGCAGCTTCCCGGGCTCAGCGCGGCCTGCTCCACCCCGGC CCATCGCCCCCGCCTCCATTTCCCGCCCTCTCTTCACCACACACACGGCCCCCCCGATCA TGGATCCGGGCAGTGGTGGCGGCGGCGGTGGCGGAGGAGGTGGGAGCAGCAGCGGCAGCA GCAGCAGCGACTCGGCACCGGATTGCTGGGACCAGGCGGACATGGAAGCCCCCGGACCGG GACCGTGCGGCGGCGCCGGCGGCCCTTTGGCAGCGGCGGCGGCCGAGGCCCAGCGTGAGC ACCTCAGCGCGGCCTTCAGCCGGCAACTCAACGTCAACGCCAAGCCCTTCGTGCCCAACG TCCACGCCGCGGAGTTCGTGCCGTCCTTCCTGCGGGGCCCGGCCCAGCCGTCAGCACCCC CAGCTGGCGCCGCCGCCAACAACCACGGAGCCGGCAGCGGCGCGGGAGGCCCTTCGGCAC CTGTGGAACCTTCTCAAGAGGAGCAGTCATTGTTGTGTGAAGGTTCAAATTCAGCTGTTA GCATGGAACTTTCAGAACCTGTTGTAGAAAATGGGGAGACAGAAATGTCCCCAGAAGAAT CATGGGAGCACAAAGAAGAAATAAGTGAAGCAGAGACAGGGGTTGGTCCCTTGGGAGATG GAAGGCCCACAGAGGAAAGTGCCCAGGAAATGATGGAGGAGGAAGAAGAAATACCAAAAC CCAAGTCTGTGGTTGCACCGCCAGGTGCTCCTAAGAAAGAACATGTAAATGTCGTGTTCA TTGGGCACGTAGATGCTGGCAAGTCAACCATAGGAGGACAAATAATGTATTTGACTGGAA TGGTTGACAAAAGGACACTTGAAAAATATGAAAGAGAAGCTAAAGAAAAAAACAGAGAAA CTTGGTACCTGTCTTGGGCCCTAGACACAAATCAGGAAGAACGAGACAAGGGTAAAACAG TAGAAGTGGGTCGTGCCTATTTTGAAACAGAAAAGAAGCATTTTACAATTCTTGATGCCC CTGGCCACAAGAGTTTTGTCCCAAATATGATTGGTGGTGCTTCTCAAGCTGATTTGGCTG TACTGGTAATCTCTGCCAGGAAAGGAGAGTTTGAAACTGGATTTGAAAAAGGAGGACAAA CAAGAGAACATGCAATGTTGGCAAAAACAGCAGGCGTAAAACACTTAATTGTGCTTATTA ATAAAATGGATGATCCAACAGTAAATTGGAGCAATGAGAGATATGAAGAATGTAAAGAGA AACTAGTGCCATTTTTGAAAAAAGTTGGCTTCAATCCCAAAAAGGACATTCACTTCATGC CCTGCTCAGGACTGACTGGAGCAAATCTTAAAGAGCAATCAGATTTCTGTCCTTGGTACA TTGGATTACCATTTATTCCATATCTGGATAATTTGCAAACTTCAATAGATCAGTTGATGG ACCAATCAGGCTGCCAATTGTGGACAAGTACAAGGATATGGGCACTGTGGTCCTGGGAAA GCTGGAATCAGGATCTATTTGTAAAGGCCAGCAGCTTGTGATGATGCCAAACAAGCACAA TGTGGAAGTTCTTGGAATCCTTTCCGATGATGTAGAAACTGATTCTGTAGCCCCAGGTGA AAACCTCAAAATCAGACTGAAAGGAATTGAAGAGGAGGAGATTCTTCCAGGGTTCATACT TTGTGATCCTAATAATCTTTGTCATTCTGGTCGCACATTTGATGCCCAGATAGTGATTAT AGAGCACAAGTCCATCATCTGCCCAGGCTATAACGCGGTGCTGCATATCCATACCTGTAT TGAAGAAGTCGAAATAACAGCCTTAATCTGCTTGGTAGACAAAAAATCAGGAGAAAAAAG TAAGACTCGACCCCGTTTTGTGAAACAAGATCAAGTATGCATTGCTCGCTTAAGGACAGC AGGAACCATCTGCCTTGAGACCTTTAAAGACTTCCCTCAGATGGGCCGTTTTACCTTAAG AGATGAGGGTAAGACCATTGCAATTGGGAAAGTTCTGAAACTGGTTCCAGAGAAAGACTA AGCATTGTCTTGATGACCCTGCACAATACTGTGAGGAAAATTGACTGCAAAAGCCTACTT CACACCGCCTTCTCTTATTTTCTGCCCATTGACAAACCTCTCCCCGTATTTTGCAAAGAC AAAATCCACAGCAAAAGTCCACATTATGTCAGCTTTCTCATATTGAGAGCTCTGCTATGC CACTGTTGAATTTTTCCCAAGATTTTTTTCTTCCCTTTCAAACTCTGCTTCCTTGGACAG ATTTGGCAATAGCTTTGTAAGTGATGTGGACATAATTGCCTACAATAATGAAAACCTACT AGGAATTTTTTTATTTTTCCATTTTCCCCTTAGGCATACTTAGTCTCTTTTTTTCCCTAG GCAGATCATTCTGAGTGTGCGAGTGTGTGTGCACATGTTACAAAGACAACTACCATGTTA ATAAAATATTCAATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 385-504, - strand, RNAz p=0.652835 | |
| 2308-2421, - strand, RNAz p=0.943094 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 385-504, - strand, RNAz p=0.652835 | |
| 2308-2421, - strand, RNAz p=0.943094 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 2-597, gnl|bosTau2|chr25 (9928758-9928173) | |
| 2-597, gnl|Hg17|chr16 (11917322-11916727) | |
| 2-597, gnl|Mm7|chr16 (10933425-10932845) | |
| 898-1418, gnl|bosTau2|chr18 (1651874-1651354) | |
| 898-1418, gnl|canFam2|chr27 (46147411-46147871) | |
| 898-1418, gnl|danRer3|chrNA (110672556-110672022) | |
| 898-1418, gnl|dasNov1|scaffold_53734 (7202-6744) | |
| 898-1418, gnl|echTel1|scaffold_23509 (2855-3311) | |
| 898-1418, gnl|fr1|chrUn (255891914-255892446) | |
| 898-1418, gnl|galGal2|chr3 (79835257-79834670) | |
| 898-1418, gnl|hg17|chr3 (194779307-194779762) | |
| 898-1418, gnl|Hg17|chr9 (132924461-132924981) | |
| 898-1418, gnl|loxAfr1|scaffold_35241 (2881-3338) | |
| 898-1418, gnl|mm7|chr15 (60535471-60535013) | |
| 898-1418, gnl|Mm7|chr2 (40563097-40563592) | |
| 898-1418, gnl|monDom2|scaffold_86 (1107545-1107087) | |
| 898-1418, gnl|oryCun1|scaffold_210807 (43780-43322) | |
| 898-1418, gnl|panTro1|chr2 (198888486-198888941) | |
| 898-1418, gnl|rheMac2|chr2 (185797691-185798139) | |
| 898-1418, gnl|rn3|chrX (156096916-156096458) | |
| 898-1418, gnl|tetNig1|chr21 (521922-522452) | |
| 898-1418, gnl|xenTro1|scaffold_67 (651680-651119) | |
| 1673-1852, gnl|bosTau2|chr25 (9902897-9902718) | |
| 1673-1852, gnl|canFam2|chr6 (34002829-34002644) | |
| 1673-1852, gnl|danRer3|chr3 (32345955-32345770) | |
| 1673-1852, gnl|dasNov1|scaffold_6163 (30659-30845) | |
| 1673-1852, gnl|echTel1|scaffold_287774 (33153-33338) | |
| 1673-1852, gnl|fr1|chrUn (112218772-112218587) | |
| 1673-1852, gnl|galGal2|chr14 (2323744-2323929) | |
| 1673-1852, gnl|hg17|chr16 (11878754-11878939) | |
| 1673-1852, gnl|Hg17|chr16 (11878941-11878762) | |
| 1673-1852, gnl|loxAfr1|scaffold_113017 (1841-1668) | |
| 1673-1852, gnl|mm7|chr16 (10903616-10903796) | |
| 1673-1852, gnl|Mm7|chr16 (10903798-10903619) | |
| 1673-1852, gnl|monDom2|scaffold_17 (28217612-28217785) | |
| 1673-1852, gnl|oryCun1|scaffold_153053 (10093-10278) | |
| 1673-1852, gnl|panTro1|chr18 (32334681-32334866) | |
| 1673-1852, gnl|rheMac2|chr20 (11948514-11948699) | |
| 1673-1852, gnl|rn3|chr10 (4279542-4279357) | |
| 1673-1852, gnl|tetNig1|chrUn_random (36671175-36671350) | |
| 1673-1852, gnl|xenTro1|scaffold_290 (343650-343823) | |
| 2108-2600, gnl|bosTau2|chr25 (9899809-9899321) | |
| 2108-2600, gnl|Hg17|chr16 (11874530-11874037) | |
| 2108-2600, gnl|Mm7|chr16 (10900082-10899601) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-597, gnl|bosTau2|chr25 (9928758-9928173) | |
| 2-597, gnl|Hg17|chr16 (11917322-11916727) | |
| 2-597, gnl|Mm7|chr16 (10933425-10932845) | |
| 898-1418, gnl|bosTau2|chr18 (1651874-1651354) | |
| 898-1418, gnl|canFam2|chr27 (46147411-46147871) | |
| 898-1418, gnl|danRer3|chrNA (110672556-110672022) | |
| 898-1418, gnl|dasNov1|scaffold_53734 (7202-6744) | |
| 898-1418, gnl|echTel1|scaffold_23509 (2855-3311) | |
| 898-1418, gnl|fr1|chrUn (255891914-255892446) | |
| 898-1418, gnl|galGal2|chr3 (79835257-79834670) | |
| 898-1418, gnl|hg17|chr3 (194779307-194779762) | |
| 898-1418, gnl|Hg17|chr9 (132924461-132924981) | |
| 898-1418, gnl|loxAfr1|scaffold_35241 (2881-3338) | |
| 898-1418, gnl|mm7|chr15 (60535471-60535013) | |
| 898-1418, gnl|Mm7|chr2 (40563097-40563592) | |
| 898-1418, gnl|monDom2|scaffold_86 (1107545-1107087) | |
| 898-1418, gnl|oryCun1|scaffold_210807 (43780-43322) | |
| 898-1418, gnl|panTro1|chr2 (198888486-198888941) | |
| 898-1418, gnl|rheMac2|chr2 (185797691-185798139) | |
| 898-1418, gnl|rn3|chrX (156096916-156096458) | |
| 898-1418, gnl|tetNig1|chr21 (521922-522452) | |
| 898-1418, gnl|xenTro1|scaffold_67 (651680-651119) | |
| 1673-1852, gnl|bosTau2|chr25 (9902897-9902718) | |
| 1673-1852, gnl|canFam2|chr6 (34002829-34002644) | |
| 1673-1852, gnl|danRer3|chr3 (32345955-32345770) | |
| 1673-1852, gnl|dasNov1|scaffold_6163 (30659-30845) | |
| 1673-1852, gnl|echTel1|scaffold_287774 (33153-33338) | |
| 1673-1852, gnl|fr1|chrUn (112218772-112218587) | |
| 1673-1852, gnl|galGal2|chr14 (2323744-2323929) | |
| 1673-1852, gnl|hg17|chr16 (11878754-11878939) | |
| 1673-1852, gnl|Hg17|chr16 (11878941-11878762) | |
| 1673-1852, gnl|loxAfr1|scaffold_113017 (1841-1668) | |
| 1673-1852, gnl|mm7|chr16 (10903616-10903796) | |
| 1673-1852, gnl|Mm7|chr16 (10903798-10903619) | |
| 1673-1852, gnl|monDom2|scaffold_17 (28217612-28217785) | |
| 1673-1852, gnl|oryCun1|scaffold_153053 (10093-10278) | |
| 1673-1852, gnl|panTro1|chr18 (32334681-32334866) | |
| 1673-1852, gnl|rheMac2|chr20 (11948514-11948699) | |
| 1673-1852, gnl|rn3|chr10 (4279542-4279357) | |
| 1673-1852, gnl|tetNig1|chrUn_random (36671175-36671350) | |
| 1673-1852, gnl|xenTro1|scaffold_290 (343650-343823) | |
| 2108-2600, gnl|bosTau2|chr25 (9899809-9899321) | |
| 2108-2600, gnl|Hg17|chr16 (11874530-11874037) | |
| 2108-2600, gnl|Mm7|chr16 (10900082-10899601) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| pro (1.02407) | |
| nje (0.33184) | |
| nco (0.323468) | |
| ldo (0.291008) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| bla (0.248694) | |
| spc (0.226732) | |
| nms (0.213858) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cag (0.151194) | |
| nca (0.136874) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (1.02407) | |
| nje (0.33184) | |
| nco (0.323468) | |
| ldo (0.291008) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| bla (0.248694) | |
| spc (0.226732) | |
| nms (0.213858) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| sin (0.174948) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cag (0.151194) | |
| nca (0.136874) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) |