Non-Coding RNA Search

Ss1.1-rthg35_i5.5

Sequence:


               
               CTTTGGGGGAAACTTCATTTAGAAAATAGCATGTTCAGCACAGCATGCCTTGTCTCTCGG
CTGCTAACAAACCTTTTATGCTAGGTATAAAGGTATTTTGACATAGAAGCTAAAATAGAA
TACTTTATGTATAGTCTAGTTTTATATTTGAATATTTGCTTTCATTGTTGCAACCATAAT
GGTTTTGCTTTCAAAAGACCTAATTCTAGATCTCATATCAAAGAAGTACACATTAGTGTG
TATAAATGAAGTTGATACGATGTCTGGGAATCCTTCATAATAATTTGAAGGGATGAGTGT
GGGGTATATAGATTTTTTAAAAATCAGCTATAAATTGGTAATTGTTGGGTGATAAATACA
CGGGGGTTCAGTACTATCCTACTTTTGTGTGTTTGGGGGGATTTTGCATAATAAAAAGTT
GGAGACGTAAATAATGTGGAATTTTTCCCTTTGTCCTCTAGGATTCTTACAGAAGCAGAG
ATTGACGCTCACCTTGTTGCTCTAGCAGAGAGAGACTAAACGTTGTAGCTAGTTTACCAA
ATCCATGACGCCACTTATCTGTGTGTTTGGTAACAACAGACCAACCTATGGAGGCCCCTG
GATTGAAAAAGGAACCTTTCCCACTCCTCCTGCCACTGAAGTGGTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGGGGGAAACTTCATTTAGAAAATAGCATGTTCAGCACAGCATGCCTTGTCTCTCGG
CTGCTAACAAACCTTTTATGCTAGGTATAAAGGTATTTTGACATAGAAGCTAAAATAGAA
TACTTTATGTATAGTCTAGTTTTATATTTGAATATTTGCTTTCATTGTTGCAACCATAAT
GGTTTTGCTTTCAAAAGACCTAATTCTAGATCTCATATCAAAGAAGTACACATTAGTGTG
TATAAATGAAGTTGATACGATGTCTGGGAATCCTTCATAATAATTTGAAGGGATGAGTGT
GGGGTATATAGATTTTTTAAAAATCAGCTATAAATTGGTAATTGTTGGGTGATAAATACA
CGGGGGTTCAGTACTATCCTACTTTTGTGTGTTTGGGGGGATTTTGCATAATAAAAAGTT
GGAGACGTAAATAATGTGGAATTTTTCCCTTTGTCCTCTAGGATTCTTACAGAAGCAGAG
ATTGACGCTCACCTTGTTGCTCTAGCAGAGAGAGACTAAACGTTGTAGCTAGTTTACCAA
ATCCATGACGCCACTTATCTGTGTGTTTGGTAACAACAGACCAACCTATGGAGGCCCCTG
GATTGAAAAAGGAACCTTTCCCACTCCTCCTGCCACTGAAGTGGTTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               530-648, - strand, RNAz p=0.829975

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               530-648, - strand, RNAz p=0.829975

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               345-648, gnl|bosTau2|chr21 (30069467-30069776)
               

               
               345-648, gnl|canFam2|chr16 (56965419-56965616)
               

               
               345-648, gnl|echTel1|scaffold_29434 (6841-6665)
               

               
               345-648, gnl|Hg17|chr14 (34856103-34856393)
               

               
               345-648, gnl|hg17|chr21 (46316299-46316480)
               

               
               345-648, gnl|loxAfr1|scaffold_52009 (6052-5855)
               

               
               345-648, gnl|mm7|chr10 (71401182-71401377)
               

               
               345-648, gnl|Mm7|chr12 (53344166-53344456)
               

               
               345-648, gnl|oryCun1|scaffold_207075 (3436-3633)
               

               
               345-648, gnl|panTro1|chr22 (46709973-46710154)
               

               
               345-648, gnl|rheMac2|chr7 (157089637-157089440)
               

               
               345-648, gnl|rn3|chr12 (330371-330566)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               345-648, gnl|bosTau2|chr21 (30069467-30069776)
               

               
               345-648, gnl|canFam2|chr16 (56965419-56965616)
               

               
               345-648, gnl|echTel1|scaffold_29434 (6841-6665)
               

               
               345-648, gnl|Hg17|chr14 (34856103-34856393)
               

               
               345-648, gnl|hg17|chr21 (46316299-46316480)
               

               
               345-648, gnl|loxAfr1|scaffold_52009 (6052-5855)
               

               
               345-648, gnl|mm7|chr10 (71401182-71401377)
               

               
               345-648, gnl|Mm7|chr12 (53344166-53344456)
               

               
               345-648, gnl|oryCun1|scaffold_207075 (3436-3633)
               

               
               345-648, gnl|panTro1|chr22 (46709973-46710154)
               

               
               345-648, gnl|rheMac2|chr7 (157089637-157089440)
               

               
               345-648, gnl|rn3|chr12 (330371-330566)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               thg (0.126791)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               cly (0.120642)

	345-648, gnl\|bosTau2\|chr21 (30069467-30069776)
	345-648, gnl\|canFam2\|chr16 (56965419-56965616)
	345-648, gnl\|echTel1\|scaffold_29434 (6841-6665)
	345-648, gnl\|Hg17\|chr14 (34856103-34856393)
	345-648, gnl\|hg17\|chr21 (46316299-46316480)
	345-648, gnl\|loxAfr1\|scaffold_52009 (6052-5855)
	345-648, gnl\|mm7\|chr10 (71401182-71401377)
	345-648, gnl\|Mm7\|chr12 (53344166-53344456)
	345-648, gnl\|oryCun1\|scaffold_207075 (3436-3633)
	345-648, gnl\|panTro1\|chr22 (46709973-46710154)
	345-648, gnl\|rheMac2\|chr7 (157089637-157089440)
	345-648, gnl\|rn3\|chr12 (330371-330566)