Non-Coding RNA Search

Ss1.1-rthg35_j19.5

Sequence:


               
               CTACTTAAAAACTCCCTATAACTGCTTGGATCTTTTAAACATTAGTGTAGCTTTACAGAC
CACTACATGAAAATTTTAAGTATACCCATAATCTTTCCACATAATGTAACATATTTTCAT
CTTACCAGGTTTTTTTCTAGTTTTTATCCATCTAATTCTGATTTATATAGTTTTTTGGAA
GTGAGGTTAATAGAACATTGCTTCGTAAACACTCCCCTATTTTATCATGTGGTTTTTATT
TATATGACTCTATCAATCAGCATATAATAATTTAGTTTACTATTATTGGACATATGGATT
ATTTTTCTTTAAATAGTTGTAATGCTACCATAAAGAAATGAATCACTTTTCCCTTATTGA
AAAAAAATGTGAACATGAAGAGAAAATAGCAAAACTGATGTTTCCCAACAATAAATGTAT
AGAAGAAAGAATTAGCATGTCACATACATGTATCACGGATGAGGCTCTGTTTTGTACAAC
CTTGGCTTTAGAACCAAACTCCCAAGCCAAAAATGTGTGGAGAAGCTGTGTTTTGAGCAT
GTCAAACAACTGTCACAGTGTCCCAGGCCTTGTCCTCCTTCACATACCCTGAGCCTATTC
ATCTTTTTTTACATTGTTTTTATTAGAGTTGATTTACAAGGTTCTGTCAATTTCTGCTCT
ACAGTAAAGTGACCCAGTCATACATGTTATTGACTCTTTCTTAATACACAATTCTTAATT
TGTGGTTGGTTGGTTCCCAGCCTTAGAACAGATTAATATCATCTAAAGTCAAGGTTGGTT
AGAAGCTAAATCACTGACTACAGGGAGAAGTGATAGGTGGCAGTCTTGGGTCAAAGGAGG
AGCTAGGGACACAGAGTTGTGCTAGGGATTACAGCACAGGATAATACCAGCTATTTCTGT
TGGGTTATTTAGAACAGGTCATGGAGTTCCCGTCGTGGCTCAGTGATTTAACGAATCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACTTAAAAACTCCCTATAACTGCTTGGATCTTTTAAACATTAGTGTAGCTTTACAGAC
CACTACATGAAAATTTTAAGTATACCCATAATCTTTCCACATAATGTAACATATTTTCAT
CTTACCAGGTTTTTTTCTAGTTTTTATCCATCTAATTCTGATTTATATAGTTTTTTGGAA
GTGAGGTTAATAGAACATTGCTTCGTAAACACTCCCCTATTTTATCATGTGGTTTTTATT
TATATGACTCTATCAATCAGCATATAATAATTTAGTTTACTATTATTGGACATATGGATT
ATTTTTCTTTAAATAGTTGTAATGCTACCATAAAGAAATGAATCACTTTTCCCTTATTGA
AAAAAAATGTGAACATGAAGAGAAAATAGCAAAACTGATGTTTCCCAACAATAAATGTAT
AGAAGAAAGAATTAGCATGTCACATACATGTATCACGGATGAGGCTCTGTTTTGTACAAC
CTTGGCTTTAGAACCAAACTCCCAAGCCAAAAATGTGTGGAGAAGCTGTGTTTTGAGCAT
GTCAAACAACTGTCACAGTGTCCCAGGCCTTGTCCTCCTTCACATACCCTGAGCCTATTC
ATCTTTTTTTACATTGTTTTTATTAGAGTTGATTTACAAGGTTCTGTCAATTTCTGCTCT
ACAGTAAAGTGACCCAGTCATACATGTTATTGACTCTTTCTTAATACACAATTCTTAATT
TGTGGTTGGTTGGTTCCCAGCCTTAGAACAGATTAATATCATCTAAAGTCAAGGTTGGTT
AGAAGCTAAATCACTGACTACAGGGAGAAGTGATAGGTGGCAGTCTTGGGTCAAAGGAGG
AGCTAGGGACACAGAGTTGTGCTAGGGATTACAGCACAGGATAATACCAGCTATTTCTGT
TGGGTTATTTAGAACAGGTCATGGAGTTCCCGTCGTGGCTCAGTGATTTAACGAATCCGA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               7-327, gnl|bosTau2|chr2 (14572212-14571888)
               

               
               7-327, gnl|Hg17|chr2 (175256938-175256101)
               

               
               7-327, gnl|Mm7|chr2 (73277417-73277017)
               


               
               397-577, gnl|bosTau2|chr2 (14571918-14571735)
               

               
               397-577, gnl|Hg17|chr2 (175256647-175255953)
               


               
               688-914, gnl|bosTau2|chr2 (14571699-14571482)
               

               
               688-914, gnl|Hg17|chr2 (175255916-175255666)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-327, gnl|bosTau2|chr2 (14572212-14571888)
               

               
               7-327, gnl|Hg17|chr2 (175256938-175256101)
               

               
               7-327, gnl|Mm7|chr2 (73277417-73277017)
               


               
               397-577, gnl|bosTau2|chr2 (14571918-14571735)
               

               
               397-577, gnl|Hg17|chr2 (175256647-175255953)
               


               
               688-914, gnl|bosTau2|chr2 (14571699-14571482)
               

               
               688-914, gnl|Hg17|chr2 (175255916-175255666)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	7-327, gnl\|bosTau2\|chr2 (14572212-14571888)
	7-327, gnl\|Hg17\|chr2 (175256938-175256101)
	7-327, gnl\|Mm7\|chr2 (73277417-73277017)

	397-577, gnl\|bosTau2\|chr2 (14571918-14571735)
	397-577, gnl\|Hg17\|chr2 (175256647-175255953)

	688-914, gnl\|bosTau2\|chr2 (14571699-14571482)
	688-914, gnl\|Hg17\|chr2 (175255916-175255666)