Non-Coding RNA Search

Ss1.1-rthg35_k17.5

Sequence:


               
               ATTTCTTCCATCTTAGTTCCTTATGTTGCCTTCGTGGTCTTTTATATATTTTTTAATTGT
ATCTCTAAGAAACAAAGTTATCTTTAAAATAAGTCAATTTAGATATATTTGTTATAATCA
AACTACAAAGTGTACAAAATTAAATTTAGCCCTTTTCTAGCAAGTGATCTTTAAAATGAA
AAATGCTGTTCTTTTAAATTCACCAAATTTGTATGTGGGAAGGCGCTGAAATGATTTTGT
AAGTGCCACTGCAGTGTTCCCTTTCAAGTGTGACCTAAATTTCAATCTAAGAACAAAACG
CACGTCTGCTCCTAGTCTGAAAAATGTAGGCATTAAGTATATATTTTAAATCACAGTGAA
ACATGTATATAAGCCTATAACAAAGATTTGTACAATCTGAAAGCCTGTTAATTTTCTATG
TAGACATACCTACACATGAAAGGGTTAAATTCACAGCCTTACTAAGTTCCTTGCTTCCAG
TATTTCGACTGGTTTCCTCCCCTCATTATTACTAATCCTACAATTACTATTATTTTTGCA
CATAGTTAACTTCCCTTCAATATGATTCTGAAAGAAAAGTGCTGTTTCGGTGGTATTGTA
TTCTCTAAATAATCATATTTAATTTTTTTAAACAAGGTTGCAGTTTCTAATTGTTCCGTT
CCTGTGTTTTTTGCTGGTGTGTAATAAAAGCAAGATTTTCTTTTCATGGTTATTTAATAC
ATTAGCTGCCTGTAAATATTTCTTGTTCTAATGCTCTGGAATGTGTTGTAGAAGTTGTAT
TAGATTAGTTTAAAGCCTTGTTTGAAAGCCACATTGTTTTGGTTATTTCTATTAAATTAG
AAAATTGAAAAAAAAAAAAAAAAAAACTCTACGTGCCCGAGGTCTCAGCCCTGGATCAGG
AGATCATTGAAGTAGATCCTGACACTAAGGAGATGCTGAAACTCTTGGACTTTGGCAGTC
TGTCCAACCTGCAAGTCACTCAGCCTACAGTTGGGATGAATTTCAAAACACCACGTGGAG
CCGTTTGAGTCTTTCTGCTATGCTGTAATATTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCTTCCATCTTAGTTCCTTATGTTGCCTTCGTGGTCTTTTATATATTTTTTAATTGT
ATCTCTAAGAAACAAAGTTATCTTTAAAATAAGTCAATTTAGATATATTTGTTATAATCA
AACTACAAAGTGTACAAAATTAAATTTAGCCCTTTTCTAGCAAGTGATCTTTAAAATGAA
AAATGCTGTTCTTTTAAATTCACCAAATTTGTATGTGGGAAGGCGCTGAAATGATTTTGT
AAGTGCCACTGCAGTGTTCCCTTTCAAGTGTGACCTAAATTTCAATCTAAGAACAAAACG
CACGTCTGCTCCTAGTCTGAAAAATGTAGGCATTAAGTATATATTTTAAATCACAGTGAA
ACATGTATATAAGCCTATAACAAAGATTTGTACAATCTGAAAGCCTGTTAATTTTCTATG
TAGACATACCTACACATGAAAGGGTTAAATTCACAGCCTTACTAAGTTCCTTGCTTCCAG
TATTTCGACTGGTTTCCTCCCCTCATTATTACTAATCCTACAATTACTATTATTTTTGCA
CATAGTTAACTTCCCTTCAATATGATTCTGAAAGAAAAGTGCTGTTTCGGTGGTATTGTA
TTCTCTAAATAATCATATTTAATTTTTTTAAACAAGGTTGCAGTTTCTAATTGTTCCGTT
CCTGTGTTTTTTGCTGGTGTGTAATAAAAGCAAGATTTTCTTTTCATGGTTATTTAATAC
ATTAGCTGCCTGTAAATATTTCTTGTTCTAATGCTCTGGAATGTGTTGTAGAAGTTGTAT
TAGATTAGTTTAAAGCCTTGTTTGAAAGCCACATTGTTTTGGTTATTTCTATTAAATTAG
AAAATTGAAAAAAAAAAAAAAAAAAACTCTACGTGCCCGAGGTCTCAGCCCTGGATCAGG
AGATCATTGAAGTAGATCCTGACACTAAGGAGATGCTGAAACTCTTGGACTTTGGCAGTC
TGTCCAACCTGCAAGTCACTCAGCCTACAGTTGGGATGAATTTCAAAACACCACGTGGAG
CCGTTTGAGTCTTTCTGCTATGCTGTAATATTTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47213229|emb|CAF89750.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47213229|emb|CAF89750.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-852, gnl|bosTau2|chr3 (26772357-26773210)
               

               
               1-852, gnl|Hg17|chr1 (114648301-114647454)
               

               
               1-852, gnl|Mm7|chr3 (103151954-103152742)
               


               
               870-1003, gnl|bosTau2|chr18 (38868480-38868616)
               

               
               870-1003, gnl|Hg17|chr22 (30760279-30760412)
               

               
               870-1003, gnl|Mm7|chr17 (28587032-28586886)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr3 (26772357-26773210)
               

               
               1-852, gnl|Hg17|chr1 (114648301-114647454)
               

               
               1-852, gnl|Mm7|chr3 (103151954-103152742)
               


               
               870-1003, gnl|bosTau2|chr18 (38868480-38868616)
               

               
               870-1003, gnl|Hg17|chr22 (30760279-30760412)
               

               
               870-1003, gnl|Mm7|chr17 (28587032-28586886)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pan (0.23596)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               thg (0.126791)

	1-852, gnl\|bosTau2\|chr3 (26772357-26773210)
	1-852, gnl\|Hg17\|chr1 (114648301-114647454)
	1-852, gnl\|Mm7\|chr3 (103151954-103152742)

	870-1003, gnl\|bosTau2\|chr18 (38868480-38868616)
	870-1003, gnl\|Hg17\|chr22 (30760279-30760412)
	870-1003, gnl\|Mm7\|chr17 (28587032-28586886)