Non-Coding RNA Search

Ss1.1-rthg35_k2.5

Sequence:


               
               TTTTTTTTTTTTTTTTCTTATGTTGGGTAGCTATCGTTTCCTCTACCTTGAACCAAGAGA
TGATGGATGATTCCATGGGCCAGTACACCAGGTTTGGATTCCTGATCTCTTGTCCTTTTA
CAAGTTGACTATTTAGATGACTGGAATGGTTTGTGTTATGGTTCTGGGAAAGAAACTGTA
GCTCTTCTGTATACTCTTAGGACCAAAGCAGTTTCTTATCAACACACGGGTCTCATCTTG
GACCTTGAAGGGTTCAGTATGATAATCATGGACTTAACCAGTTCTGCTCTGGTTTGAGAC
TTAACTGAAAATAGAGGCAAGAAGCTTCTTATTTTATCTTAGGAAGACCTAATTCAGTGG
ATGGCAACTGGAACATTGGTTGTAAGACCAGTGAAGTTTTCACCCAACTGGAATTTAAGA
GAAAGAACTAGTGTGTATTTAAGAAGTCACGGGCATTGCAAAATCCCTCTCAGTGATAGC
AAGAAATGCACTAGGCTGACCATTCTCTCTAGAAATAGTCCAGGTATGAACTAAGAAATG
CCAATGCACATGCAGCCGTTCCTAAAAGACGGAGAGGTAAATAACTTTTTGTGTGTGTTT
TTAAAATAATGACAGTGGGTCCCAGAACTTTGAAAAGTCATAGGGATTTCTAAAAACAAA
CAGATTCGCAAGTGCTGTGCGCTTGTCAGAAGACCAGTCCAGGGTCCACCAACCAGGAGG
CAACTTACTGTATAAATTATGCAGAGTTATTTTCCTATATCTCACAGTATTAAAAATAAA
TAATTAAAAAATGAAAAGAATAAAGAAACGAGTTGACCTCGGTCACACAATGTTACTATC
AAATCAGTCGTTGTTATTTTTTTTAATGTAATTTGTACATCTTTTGTCAATCTGTACATT
TGAGGTGTGTGTTCGTTTTCACAGCAAGTTTTTAGAAAAGCATAATGTTGTTGTGTTGTG
GAGAGGATGTTGATGTCACTGAGTTAACTGGAAAGAGGATCACTGGTTCAGTAATTTAAC
TTGGAGCACGGACAAACAAAGATGGTCCCTTTCTTTGGAAATGTTTGTAAATAACCAAAC
TGCAGTCACAAAACTGGGAAAAGAACAACCTGACTTTCCCATTCAGATATGAGGGATTTT
TCTATCCTATATATGCAATATTTTTTTAGATATTAAAATATCTATAATTTTGCAGATAAT
CATTGACTTTTTTAAGCTGTGTTAAGTGTTAAGCTGACAATGTCATCAAAAACTCTGTTG
TAAAATAATTCGACTAAATAAATTGTACAACCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTCTTATGTTGGGTAGCTATCGTTTCCTCTACCTTGAACCAAGAGA
TGATGGATGATTCCATGGGCCAGTACACCAGGTTTGGATTCCTGATCTCTTGTCCTTTTA
CAAGTTGACTATTTAGATGACTGGAATGGTTTGTGTTATGGTTCTGGGAAAGAAACTGTA
GCTCTTCTGTATACTCTTAGGACCAAAGCAGTTTCTTATCAACACACGGGTCTCATCTTG
GACCTTGAAGGGTTCAGTATGATAATCATGGACTTAACCAGTTCTGCTCTGGTTTGAGAC
TTAACTGAAAATAGAGGCAAGAAGCTTCTTATTTTATCTTAGGAAGACCTAATTCAGTGG
ATGGCAACTGGAACATTGGTTGTAAGACCAGTGAAGTTTTCACCCAACTGGAATTTAAGA
GAAAGAACTAGTGTGTATTTAAGAAGTCACGGGCATTGCAAAATCCCTCTCAGTGATAGC
AAGAAATGCACTAGGCTGACCATTCTCTCTAGAAATAGTCCAGGTATGAACTAAGAAATG
CCAATGCACATGCAGCCGTTCCTAAAAGACGGAGAGGTAAATAACTTTTTGTGTGTGTTT
TTAAAATAATGACAGTGGGTCCCAGAACTTTGAAAAGTCATAGGGATTTCTAAAAACAAA
CAGATTCGCAAGTGCTGTGCGCTTGTCAGAAGACCAGTCCAGGGTCCACCAACCAGGAGG
CAACTTACTGTATAAATTATGCAGAGTTATTTTCCTATATCTCACAGTATTAAAAATAAA
TAATTAAAAAATGAAAAGAATAAAGAAACGAGTTGACCTCGGTCACACAATGTTACTATC
AAATCAGTCGTTGTTATTTTTTTTAATGTAATTTGTACATCTTTTGTCAATCTGTACATT
TGAGGTGTGTGTTCGTTTTCACAGCAAGTTTTTAGAAAAGCATAATGTTGTTGTGTTGTG
GAGAGGATGTTGATGTCACTGAGTTAACTGGAAAGAGGATCACTGGTTCAGTAATTTAAC
TTGGAGCACGGACAAACAAAGATGGTCCCTTTCTTTGGAAATGTTTGTAAATAACCAAAC
TGCAGTCACAAAACTGGGAAAAGAACAACCTGACTTTCCCATTCAGATATGAGGGATTTT
TCTATCCTATATATGCAATATTTTTTTAGATATTAAAATATCTATAATTTTGCAGATAAT
CATTGACTTTTTTAAGCTGTGTTAAGTGTTAAGCTGACAATGTCATCAAAAACTCTGTTG
TAAAATAATTCGACTAAATAAATTGTACAACCTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               671-827, - strand, RNAz p=0.774248

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               671-827, - strand, RNAz p=0.774248

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1295, gnl|bosTau2|chr29 (23253164-23251855)
               

               
               1-1295, gnl|Hg17|chr11 (128186247-128187516)
               

               
               1-1295, gnl|Mm7|chr9 (32325776-32324372)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1295, gnl|bosTau2|chr29 (23253164-23251855)
               

               
               1-1295, gnl|Hg17|chr11 (128186247-128187516)
               

               
               1-1295, gnl|Mm7|chr9 (32325776-32324372)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               cbl (0.573987)
               

               
               ret (0.3862)
               

               
               eye (0.341006)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)
               

               
               ret (0.3862)
               

               
               eye (0.341006)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	1-1295, gnl\|bosTau2\|chr29 (23253164-23251855)
	1-1295, gnl\|Hg17\|chr11 (128186247-128187516)
	1-1295, gnl\|Mm7\|chr9 (32325776-32324372)

	cbl (0.573987)
	ret (0.3862)
	eye (0.341006)
	isp (0.300752)
	ski (0.29347)
	liv (0.292569)
	csk (0.281492)
	gul (0.177588)
	rec (0.17307)
	nje (0.16592)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	ssp (0.13552)
	ova (0.129132)
	thg (0.126791)
	clu (0.119646)
	med (0.116252)