Non-Coding RNA Search

Ss1.1-rthg35_o19.5

Sequence:


               
               ATATGAACCTACTGTTGAAAGATAATTTGAGGGAAATATGAAGAACTGAGAAGAAAAAAA
AAAATAAAAGAACCACCTCAACTGCCTATTCTAAAATGTTGATCATTTTATGGTAAGGGA
AGAATTCCAGGCTATGGCCATTGAATGTACAGGTCTGTGGGCAGTTTTAAGCAAACTCTT
CCCTCTGAAGTGTTAACGAATTGCTGCCATTCACTTTAATGATCCAATAGGATCAAATAT
CAAGTTAGTAAGTATAATCTGCACATATGACTAATGCCTTACTCTCTTGAAATTTTAACC
TGTGATTACTTTCTATGCCCAAGTATTTGTTATATCAGTGATGACACCTAAGTGCCTTCC
TGTTCTTCAGGTTTTCCTTTTCAAATAGGGTCCAACTCACCAACTTTCATTAGGTCAGCA
GCCTCCCTAAAGACCAAAATTAGAACAATCCATCACCTAGTTCTTCACACTTGTCTTTGA
CTCTCAGATACAGAATGAGATGAAGTTCATGTCTGCACTTGATCACACAACATCTTAATC
CATATTGAGAATGGTCCACATCAGCGCCATGAAATGAATTAAGGTGGATAAATGGGGTCA
AGCCCTCTCTGGGCTGGCAGGAGTGGAAGCCAACTTTTCCTGCCTCTCACCAGCTGAATG
AGGTCAGCATGTCTATTCAGCTTCGTTTATTTTCAAGAATAATCACGCTTTCCTGACTCC
AAACTAATCCATCACCAGGGTGGTTTAGTGGCTGAACATTGTGTTCCCTTTTCAGCTGAT
CAGTGGGCCTCCAGGGAAGGGCTCATAAAATGGAGGCCATTGTGTGAGACTGTCAGAGTT
GTTGCAAATGTGACCCCTTCAAAGTAAAGCACTTGCAACTGTCTGTTATGCTGTGACACA
GGGCCCCTCCCCCTGCCAGGGCTGTGGATCTAATCCAAGCATCACTTGACTGAGAGAGAA
GATGGGGGAGGAGGCAGTAACGAAAGATTGAAGTAATTTTGCTGGAATAAATTCAAATTC
TTCTGAACTCAAACTGAGGAATTTTACCTGTAAACCTGAGTCATACAGAAAGCTGCCTGG
TACATCCAAAAGCTTTTTATTCCTCCTGCTCATATTAAGATTCTTCCCTGGGGGACTTTA
TTTTTAACCTTCAGTTATGCTTTTATTTTTATTTTCATACACCTGTTGGAACCCTGCTTG
ATTTTTTTTTCTTTTGCCTCTTCCAATTTTCCTGACACTTTAATTGCCAACCTGTTACCT
ACTTAGGTTTTTTTTTTTTTGCATTTAAAACAGACACTGGCATGGACATAGTTTTACTTT
TAAACTGTGTACATAACTGAAAATGTACTATACTGCATAATTTTTAAGTGTAAAGATATT
TTTATCTTTATATGAGGAAAATCACTTGGGAATTACTTTGTTATTCAATCTGTAAACTGT
GTATCCCAAGACATGTCTGTTCTATATAGATGCTTAGTCCCTTGTGCAAATCAAGTGCTG
GTCCAAAAGATTGCTGAAATTTTATATGCTTACTGATATATTTTACACTTTTTTATCCTG
CATGTCTTGTAAAGTCATAAGTCTGCACAATAAAAATGTTTAACAGTTCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGAACCTACTGTTGAAAGATAATTTGAGGGAAATATGAAGAACTGAGAAGAAAAAAA
AAAATAAAAGAACCACCTCAACTGCCTATTCTAAAATGTTGATCATTTTATGGTAAGGGA
AGAATTCCAGGCTATGGCCATTGAATGTACAGGTCTGTGGGCAGTTTTAAGCAAACTCTT
CCCTCTGAAGTGTTAACGAATTGCTGCCATTCACTTTAATGATCCAATAGGATCAAATAT
CAAGTTAGTAAGTATAATCTGCACATATGACTAATGCCTTACTCTCTTGAAATTTTAACC
TGTGATTACTTTCTATGCCCAAGTATTTGTTATATCAGTGATGACACCTAAGTGCCTTCC
TGTTCTTCAGGTTTTCCTTTTCAAATAGGGTCCAACTCACCAACTTTCATTAGGTCAGCA
GCCTCCCTAAAGACCAAAATTAGAACAATCCATCACCTAGTTCTTCACACTTGTCTTTGA
CTCTCAGATACAGAATGAGATGAAGTTCATGTCTGCACTTGATCACACAACATCTTAATC
CATATTGAGAATGGTCCACATCAGCGCCATGAAATGAATTAAGGTGGATAAATGGGGTCA
AGCCCTCTCTGGGCTGGCAGGAGTGGAAGCCAACTTTTCCTGCCTCTCACCAGCTGAATG
AGGTCAGCATGTCTATTCAGCTTCGTTTATTTTCAAGAATAATCACGCTTTCCTGACTCC
AAACTAATCCATCACCAGGGTGGTTTAGTGGCTGAACATTGTGTTCCCTTTTCAGCTGAT
CAGTGGGCCTCCAGGGAAGGGCTCATAAAATGGAGGCCATTGTGTGAGACTGTCAGAGTT
GTTGCAAATGTGACCCCTTCAAAGTAAAGCACTTGCAACTGTCTGTTATGCTGTGACACA
GGGCCCCTCCCCCTGCCAGGGCTGTGGATCTAATCCAAGCATCACTTGACTGAGAGAGAA
GATGGGGGAGGAGGCAGTAACGAAAGATTGAAGTAATTTTGCTGGAATAAATTCAAATTC
TTCTGAACTCAAACTGAGGAATTTTACCTGTAAACCTGAGTCATACAGAAAGCTGCCTGG
TACATCCAAAAGCTTTTTATTCCTCCTGCTCATATTAAGATTCTTCCCTGGGGGACTTTA
TTTTTAACCTTCAGTTATGCTTTTATTTTTATTTTCATACACCTGTTGGAACCCTGCTTG
ATTTTTTTTTCTTTTGCCTCTTCCAATTTTCCTGACACTTTAATTGCCAACCTGTTACCT
ACTTAGGTTTTTTTTTTTTTGCATTTAAAACAGACACTGGCATGGACATAGTTTTACTTT
TAAACTGTGTACATAACTGAAAATGTACTATACTGCATAATTTTTAAGTGTAAAGATATT
TTTATCTTTATATGAGGAAAATCACTTGGGAATTACTTTGTTATTCAATCTGTAAACTGT
GTATCCCAAGACATGTCTGTTCTATATAGATGCTTAGTCCCTTGTGCAAATCAAGTGCTG
GTCCAAAAGATTGCTGAAATTTTATATGCTTACTGATATATTTTACACTTTTTTATCCTG
CATGTCTTGTAAAGTCATAAGTCTGCACAATAAAAATGTTTAACAGTTCAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1319-1617, gnl|bosTau2|chr12 (37812746-37813043)
               

               
               1319-1617, gnl|Hg17|chr7 (115794889-115795184)
               

               
               1319-1617, gnl|Mm7|chr6 (17281487-17281779)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1319-1617, gnl|bosTau2|chr12 (37812746-37813043)
               

               
               1319-1617, gnl|Hg17|chr7 (115794889-115795184)
               

               
               1319-1617, gnl|Mm7|chr6 (17281487-17281779)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

Help | Less info


               
               bla (1.61651)
               

               
               liv (1.60913)
               

               
               fat (1.32685)
               

               
               clu (1.07681)
               

               
               bfe (0.899146)
               

               
               amn (0.835422)
               

               
               gul (0.710353)
               

               
               ste (0.676041)
               

               
               vin (0.665115)
               

               
               csk (0.562984)
               

               
               tra (0.492368)
               

               
               ldo (0.485013)
               

               
               mgp (0.461361)
               

               
               jca (0.45584)
               

               
               isp (0.451128)
               

               
               nms (0.427716)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (1.61651)
               

               
               liv (1.60913)
               

               
               fat (1.32685)
               

               
               clu (1.07681)
               

               
               bfe (0.899146)
               

               
               amn (0.835422)
               

               
               gul (0.710353)
               

               
               ste (0.676041)
               

               
               vin (0.665115)
               

               
               csk (0.562984)
               

               
               tra (0.492368)
               

               
               ldo (0.485013)
               

               
               mgp (0.461361)
               

               
               jca (0.45584)
               

               
               isp (0.451128)
               

               
               nms (0.427716)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               che (0.272628)
               

               
               ssp (0.271039)
               

               
               ute (0.265569)
               

               
               ese (0.253004)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	1319-1617, gnl\|bosTau2\|chr12 (37812746-37813043)
	1319-1617, gnl\|Hg17\|chr7 (115794889-115795184)
	1319-1617, gnl\|Mm7\|chr6 (17281487-17281779)

	bla (1.61651)
	liv (1.60913)
	fat (1.32685)
	clu (1.07681)
	bfe (0.899146)
	amn (0.835422)
	gul (0.710353)
	ste (0.676041)
	vin (0.665115)
	csk (0.562984)
	tra (0.492368)
	ldo (0.485013)
	mgp (0.461361)
	jca (0.45584)
	isp (0.451128)
	nms (0.427716)
	sag (0.36543)
	mgm (0.360685)
	cty (0.31224)
	sme (0.305437)
	ski (0.29347)
	che (0.272628)
	ssp (0.271039)
	ute (0.265569)
	ese (0.253004)
	tes (0.207814)
	hea (0.204499)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	rec (0.17307)
	mcp (0.170648)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	hlv (0.139256)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	eru (0.120048)
	eje (0.0988338)