Non-Coding RNA Search

Ss1.1-rton1201b_d15.5

Sequence:


               
               GAGTTCCTGTTTGGCTCATCCCTCACCAGCCCACCGCCCTCCACACACATCCCTTTCTTC
CCCCGCCAGCTGTAAAAGAACCTCTGTGATACTGATTCTTTTTTCTTTGAAGAACTCCCC
AGAATAAGTTTTGCCTTCTTTTAGGCCACGCTCCATGGTCTTTTAAAATATAAAACCTAA
TTCTCGAGGAAGTGAGAAGGGTCTGCTCTACGAGTGAGCTCACTGAACCAGGGTAGGGGA
AGGTGGCCGAGGAGGTGACATGCAACCGCAGGAAGCTGTTCTCTGCCTAGGTCTCAAAAC
TGTCCTGCTCGCTTGAGGAGGCTTTCCACAAACAGAAGGAGGACCTTTTAGAATTCAGTT
TACTCTTCAGTATTTTATAATGTTCAGCTTTTTAAAAGGCTATATTTTTCAAAGAGGAAG
GGGTGAGCATGCAGTCGCTCACGTTGCAACCAATTCTGAAGTGGTTTGAATGGTATCCCT
TAGTAACTTGCACTTGTTTAAAGAGACGTGGAGTTGGGCCACAGTCAGAACGAAGTCAGG
GAAGGAGATGGATGAGGAAGGCCAGTCATTCTCAGTACATTTGCTAGCACTTTATTGAGA
AATTGACCATGAATCAACTCGTCTTAACTTCAAATATGTATGTATATACACATACATATA
TATATATATATATACTGAGTGCATCTATTCTCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTTCCTGTTTGGCTCATCCCTCACCAGCCCACCGCCCTCCACACACATCCCTTTCTTC
CCCCGCCAGCTGTAAAAGAACCTCTGTGATACTGATTCTTTTTTCTTTGAAGAACTCCCC
AGAATAAGTTTTGCCTTCTTTTAGGCCACGCTCCATGGTCTTTTAAAATATAAAACCTAA
TTCTCGAGGAAGTGAGAAGGGTCTGCTCTACGAGTGAGCTCACTGAACCAGGGTAGGGGA
AGGTGGCCGAGGAGGTGACATGCAACCGCAGGAAGCTGTTCTCTGCCTAGGTCTCAAAAC
TGTCCTGCTCGCTTGAGGAGGCTTTCCACAAACAGAAGGAGGACCTTTTAGAATTCAGTT
TACTCTTCAGTATTTTATAATGTTCAGCTTTTTAAAAGGCTATATTTTTCAAAGAGGAAG
GGGTGAGCATGCAGTCGCTCACGTTGCAACCAATTCTGAAGTGGTTTGAATGGTATCCCT
TAGTAACTTGCACTTGTTTAAAGAGACGTGGAGTTGGGCCACAGTCAGAACGAAGTCAGG
GAAGGAGATGGATGAGGAAGGCCAGTCATTCTCAGTACATTTGCTAGCACTTTATTGAGA
AATTGACCATGAATCAACTCGTCTTAACTTCAAATATGTATGTATATACACATACATATA
TATATATATATATACTGAGTGCATCTATTCTCACCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               70-227, - strand, RNAz p=0.744746

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-227, - strand, RNAz p=0.744746

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr5 (51215847-51216483)
               

               
               1-648, gnl|Hg17|chr12 (26166090-26165414)
               

               
               1-648, gnl|Mm7|chr6 (145953177-145952591)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr5 (51215847-51216483)
               

               
               1-648, gnl|Hg17|chr12 (26166090-26165414)
               

               
               1-648, gnl|Mm7|chr6 (145953177-145952591)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ton (0.1755)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cbl (0.114797)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cbl (0.114797)

	1-648, gnl\|bosTau2\|chr5 (51215847-51216483)
	1-648, gnl\|Hg17\|chr12 (26166090-26165414)
	1-648, gnl\|Mm7\|chr6 (145953177-145952591)

	ton (0.1755)
	nco (0.161734)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	cbl (0.114797)