Non-Coding RNA Search

Ss1.1-rton1201b_h9.5

Sequence:


               
               CACACATTCCCCTGCTCTCAGAGCCCTCTACTCCAGAAACCATGTGCTGCAACAACTTCT
CCAGCACTATCTTCCCAAGATGCTACTGGGGCAGCTACGGCTACCCTCTGGGGTACAGTG
TTGGCTGTGGCTACTCACCAGTGGGCTATGGCTTCGGCTACGGCTGCAATGGCTGTGGGG
CTTTCGGCTACAGAAGATACTGGCCATTTGCTCTCTACTGATTTACTGAAATACCTGAGG
CACAGCCTCTTCTGTTCTAAGGCTGAGAGACGCACTTCTACCTCCTCATTGACCCGTCTT
CATCACCAACCTCCCAGTCACTGCTTTTCCGACCTAGAACCAGAGTCCCAAAGGAAGAAC
ATGAAAAACCACTTGATGCCTCCAGCTGCCATCCCTGGATGATGTTTGTTGGGACATATT
CAGAAGCTTGACACCCAAATACGTATTACTTTTGAATTTTCCACCATGCTCATGTCTCTT
GTCATAACCAAATTGTGGATGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACACATTCCCCTGCTCTCAGAGCCCTCTACTCCAGAAACCATGTGCTGCAACAACTTCT
CCAGCACTATCTTCCCAAGATGCTACTGGGGCAGCTACGGCTACCCTCTGGGGTACAGTG
TTGGCTGTGGCTACTCACCAGTGGGCTATGGCTTCGGCTACGGCTGCAATGGCTGTGGGG
CTTTCGGCTACAGAAGATACTGGCCATTTGCTCTCTACTGATTTACTGAAATACCTGAGG
CACAGCCTCTTCTGTTCTAAGGCTGAGAGACGCACTTCTACCTCCTCATTGACCCGTCTT
CATCACCAACCTCCCAGTCACTGCTTTTCCGACCTAGAACCAGAGTCCCAAAGGAAGAAC
ATGAAAAACCACTTGATGCCTCCAGCTGCCATCCCTGGATGATGTTTGTTGGGACATATT
CAGAAGCTTGACACCCAAATACGTATTACTTTTGAATTTTCCACCATGCTCATGTCTCTT
GTCATAACCAAATTGTGGATGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               KRA81_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               KRA81_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               32-201, - strand, RNAz p=0.985853
               

               
               85-192, + strand, RNAz p=0.97969

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-201, - strand, RNAz p=0.985853
               

               
               85-192, + strand, RNAz p=0.97969

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_175857, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_175857, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               5-502, gnl|bosTau2|chr1 (4060713-4060217)
               

               
               5-502, gnl|canFam2|chr31 (28827534-28828416)
               

               
               5-502, gnl|dasNov1|scaffold_29665 (38109-37206)
               

               
               5-502, gnl|echTel1|scaffold_175991 (1542-648)
               

               
               5-502, gnl|hg17|chr21 (31106828-31107740)
               

               
               5-502, gnl|Hg17|chr21 (31107446-31106923)
               

               
               5-502, gnl|loxAfr1|scaffold_74584 (27847-28756)
               

               
               5-502, gnl|mm7|chr16 (89537252-89538144)
               

               
               5-502, gnl|Mm7|chr16 (89537870-89537347)
               

               
               5-502, gnl|monDom2|scaffold_29 (8078398-8079236)
               

               
               5-502, gnl|oryCun1|scaffold_208142 (40804-39904)
               

               
               5-502, gnl|panTro1|chr22 (31075055-31075970)
               

               
               5-502, gnl|rheMac2|chr3 (15695052-15694140)
               

               
               5-502, gnl|rn3|chr11 (29275825-29276696)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-502, gnl|bosTau2|chr1 (4060713-4060217)
               

               
               5-502, gnl|canFam2|chr31 (28827534-28828416)
               

               
               5-502, gnl|dasNov1|scaffold_29665 (38109-37206)
               

               
               5-502, gnl|echTel1|scaffold_175991 (1542-648)
               

               
               5-502, gnl|hg17|chr21 (31106828-31107740)
               

               
               5-502, gnl|Hg17|chr21 (31107446-31106923)
               

               
               5-502, gnl|loxAfr1|scaffold_74584 (27847-28756)
               

               
               5-502, gnl|mm7|chr16 (89537252-89538144)
               

               
               5-502, gnl|Mm7|chr16 (89537870-89537347)
               

               
               5-502, gnl|monDom2|scaffold_29 (8078398-8079236)
               

               
               5-502, gnl|oryCun1|scaffold_208142 (40804-39904)
               

               
               5-502, gnl|panTro1|chr22 (31075055-31075970)
               

               
               5-502, gnl|rheMac2|chr3 (15695052-15694140)
               

               
               5-502, gnl|rn3|chr11 (29275825-29276696)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.702001)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.702001)

	32-201, - strand, RNAz p=0.985853
	85-192, + strand, RNAz p=0.97969

	5-502, gnl\|bosTau2\|chr1 (4060713-4060217)
	5-502, gnl\|canFam2\|chr31 (28827534-28828416)
	5-502, gnl\|dasNov1\|scaffold_29665 (38109-37206)
	5-502, gnl\|echTel1\|scaffold_175991 (1542-648)
	5-502, gnl\|hg17\|chr21 (31106828-31107740)
	5-502, gnl\|Hg17\|chr21 (31107446-31106923)
	5-502, gnl\|loxAfr1\|scaffold_74584 (27847-28756)
	5-502, gnl\|mm7\|chr16 (89537252-89538144)
	5-502, gnl\|Mm7\|chr16 (89537870-89537347)
	5-502, gnl\|monDom2\|scaffold_29 (8078398-8079236)
	5-502, gnl\|oryCun1\|scaffold_208142 (40804-39904)
	5-502, gnl\|panTro1\|chr22 (31075055-31075970)
	5-502, gnl\|rheMac2\|chr3 (15695052-15694140)
	5-502, gnl\|rn3\|chr11 (29275825-29276696)