Non-Coding RNA Search

Ss1.1-rton1202b_l15.5

Sequence:


               
               TGGAGAGGCTGCTGCTGCCGCTACTGATGGCGCAACTCTGGGTCGCGGAGGCTCTGCTGA
TCCCCCAAAACGACACGACCTCGGATTTTGTGGCCTCCAGCGCCCCGTGCGCTCATGGCT
CGCAGCCCTGGCAGGTGTCCCTCTTCAATGGCCTCTCGTTCCACTGCGCCGGCGTCCTGG
TGGACAAGAGCTGGGTGCTCACGGCTGCGCACTGCGGGAACAATAAACCTCTGTGGGCTC
GAGTTGGGGATGACCACCTGCTGCTTCTCCAGGGTGAGCAGCTCCGTCGGACCTCTCGTC
CGATTATCCATCCCAAGTACCACCAGGGCTCGGGCCCCATCCTACCAAGGCGAACAGATG
AACATGATCTAATGCTGCTGAAGCTGCTCAGGCCCGTGGTGCTGGGGCCGCGAGTCCAGC
CCCTACGCCTGCCCTACCACTGTGCCCAGCCCGGAGACCAGTGCCAGGTCGCCGGCTGGG
CCACCACAGCCTCCCGAAGAGTGAAGTACAACAGGGGCCTGAGTTGCTCCAGGGTCACCA
TTCTGAGCCCTAGAGAATGTGAGGTCTTCTATCCTGGCGTGCTCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGAGGCTGCTGCTGCCGCTACTGATGGCGCAACTCTGGGTCGCGGAGGCTCTGCTGA
TCCCCCAAAACGACACGACCTCGGATTTTGTGGCCTCCAGCGCCCCGTGCGCTCATGGCT
CGCAGCCCTGGCAGGTGTCCCTCTTCAATGGCCTCTCGTTCCACTGCGCCGGCGTCCTGG
TGGACAAGAGCTGGGTGCTCACGGCTGCGCACTGCGGGAACAATAAACCTCTGTGGGCTC
GAGTTGGGGATGACCACCTGCTGCTTCTCCAGGGTGAGCAGCTCCGTCGGACCTCTCGTC
CGATTATCCATCCCAAGTACCACCAGGGCTCGGGCCCCATCCTACCAAGGCGAACAGATG
AACATGATCTAATGCTGCTGAAGCTGCTCAGGCCCGTGGTGCTGGGGCCGCGAGTCCAGC
CCCTACGCCTGCCCTACCACTGTGCCCAGCCCGGAGACCAGTGCCAGGTCGCCGGCTGGG
CCACCACAGCCTCCCGAAGAGTGAAGTACAACAGGGGCCTGAGTTGCTCCAGGGTCACCA
TTCTGAGCCCTAGAGAATGTGAGGTCTTCTATCCTGGCGTGCTCACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57037477|ref|XP_541466.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57037477|ref|XP_541466.1|

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               42-226, gnl|bosTau2|chr18 (52229168-52228984)
               

               
               42-226, gnl|canFam2|chr1 (108741460-108741234)
               

               
               42-226, gnl|dasNov1|scaffold_159252 (3868-4085)
               

               
               42-226, gnl|echTel1|scaffold_239633 (12660-12884)
               

               
               42-226, gnl|hg17|chr19 (56212179-56212401)
               

               
               42-226, gnl|Hg17|chr19 (56212359-56212178)
               

               
               42-226, gnl|loxAfr1|scaffold_98971 (697-925)
               

               
               42-226, gnl|mm7|chr7 (39958612-39958398)
               

               
               42-226, gnl|Mm7|chr7 (39958427-39958611)
               

               
               42-226, gnl|oryCun1|scaffold_145129 (15343-15607)
               

               
               42-226, gnl|panTro1|chr20 (53656098-53656320)
               

               
               42-226, gnl|rheMac2|chr19 (57209948-57210170)
               

               
               42-226, gnl|rn3|chr1 (94290281-94290067)
               


               
               228-506, gnl|bosTau2|chr18 (52228070-52227792)
               

               
               228-506, gnl|Hg17|chr19 (56211223-56210945)
               

               
               228-506, gnl|Mm7|chr7 (39959150-39959428)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-226, gnl|bosTau2|chr18 (52229168-52228984)
               

               
               42-226, gnl|canFam2|chr1 (108741460-108741234)
               

               
               42-226, gnl|dasNov1|scaffold_159252 (3868-4085)
               

               
               42-226, gnl|echTel1|scaffold_239633 (12660-12884)
               

               
               42-226, gnl|hg17|chr19 (56212179-56212401)
               

               
               42-226, gnl|Hg17|chr19 (56212359-56212178)
               

               
               42-226, gnl|loxAfr1|scaffold_98971 (697-925)
               

               
               42-226, gnl|mm7|chr7 (39958612-39958398)
               

               
               42-226, gnl|Mm7|chr7 (39958427-39958611)
               

               
               42-226, gnl|oryCun1|scaffold_145129 (15343-15607)
               

               
               42-226, gnl|panTro1|chr20 (53656098-53656320)
               

               
               42-226, gnl|rheMac2|chr19 (57209948-57210170)
               

               
               42-226, gnl|rn3|chr1 (94290281-94290067)
               


               
               228-506, gnl|bosTau2|chr18 (52228070-52227792)
               

               
               228-506, gnl|Hg17|chr19 (56211223-56210945)
               

               
               228-506, gnl|Mm7|chr7 (39959150-39959428)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.526501)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)

	42-226, gnl\|bosTau2\|chr18 (52229168-52228984)
	42-226, gnl\|canFam2\|chr1 (108741460-108741234)
	42-226, gnl\|dasNov1\|scaffold_159252 (3868-4085)
	42-226, gnl\|echTel1\|scaffold_239633 (12660-12884)
	42-226, gnl\|hg17\|chr19 (56212179-56212401)
	42-226, gnl\|Hg17\|chr19 (56212359-56212178)
	42-226, gnl\|loxAfr1\|scaffold_98971 (697-925)
	42-226, gnl\|mm7\|chr7 (39958612-39958398)
	42-226, gnl\|Mm7\|chr7 (39958427-39958611)
	42-226, gnl\|oryCun1\|scaffold_145129 (15343-15607)
	42-226, gnl\|panTro1\|chr20 (53656098-53656320)
	42-226, gnl\|rheMac2\|chr19 (57209948-57210170)
	42-226, gnl\|rn3\|chr1 (94290281-94290067)

	228-506, gnl\|bosTau2\|chr18 (52228070-52227792)
	228-506, gnl\|Hg17\|chr19 (56211223-56210945)
	228-506, gnl\|Mm7\|chr7 (39959150-39959428)