Non-Coding RNA Search

Ss1.1-rton1203b_l19.5

Sequence:


               
               ATGCCTGCCTTAGAGCCCCCACAACACCCAGTCCGGTGCCCAGGATAGAGTCATTGGTTG
AATGCATCTAACAGGAGGCAAAGTCTTCATCTGATGCTGGCTGGCAAAGGAAAATCTATT
TATTCAGCAAACATTTCTCAAGCGTCGAGTCTGTGCCGGTCACTGAGGGCACAGAGCTGA
GTGCGGCCTGGTTCCTTCCTCGAGGAGCACAGGGCAGACGTCCAACTAGGGGGCCATGGA
GAGGTGTCTGGAAACCAAGGCCTGGCATAGGCCTTCCTGGTGTAGGTGGTCAGGGGTGGG
AAGGTGCCCGTCTGGGCCAGGGGAACACAAGGTGGTAGGCCAGGGGGATGGAGAGGGCCT
GCCTTCTCCCGGGACAGCTAGAAGTGCGGTTCCCCCCCCCCCCACTGCGGTCCGTCCTGA
CCTCACTTCCTGCATTCCTGAACATCTAGGCCTGGCTTTAAAGGTTGCCACAGGCCACAC
CGAGGAAGAGAGCCAGGGCTGGCCCAAGGACCGCCTGTGGGGGCGGGGGGCGGGGGGATG
AGCTGTTAGTCTCACCCCGTTTTCTCTCTTTTCAGGCGAGGGCCCCAAAGCTCACATTCG
CAAGCTGGCTGAGTGCATCCGCTGGTCCTACGGGGCCGGGATCGTCCTCAGGCTGGGCAA
CATCGCCCGGCTGGAGCTGAACTACTGCATCCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCTGCCTTAGAGCCCCCACAACACCCAGTCCGGTGCCCAGGATAGAGTCATTGGTTG
AATGCATCTAACAGGAGGCAAAGTCTTCATCTGATGCTGGCTGGCAAAGGAAAATCTATT
TATTCAGCAAACATTTCTCAAGCGTCGAGTCTGTGCCGGTCACTGAGGGCACAGAGCTGA
GTGCGGCCTGGTTCCTTCCTCGAGGAGCACAGGGCAGACGTCCAACTAGGGGGCCATGGA
GAGGTGTCTGGAAACCAAGGCCTGGCATAGGCCTTCCTGGTGTAGGTGGTCAGGGGTGGG
AAGGTGCCCGTCTGGGCCAGGGGAACACAAGGTGGTAGGCCAGGGGGATGGAGAGGGCCT
GCCTTCTCCCGGGACAGCTAGAAGTGCGGTTCCCCCCCCCCCCACTGCGGTCCGTCCTGA
CCTCACTTCCTGCATTCCTGAACATCTAGGCCTGGCTTTAAAGGTTGCCACAGGCCACAC
CGAGGAAGAGAGCCAGGGCTGGCCCAAGGACCGCCTGTGGGGGCGGGGGGCGGGGGGATG
AGCTGTTAGTCTCACCCCGTTTTCTCTCTTTTCAGGCGAGGGCCCCAAAGCTCACATTCG
CAAGCTGGCTGAGTGCATCCGCTGGTCCTACGGGGCCGGGATCGTCCTCAGGCTGGGCAA
CATCGCCCGGCTGGAGCTGAACTACTGCATCCCCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               285-439, - strand, RNAz p=0.975405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-439, - strand, RNAz p=0.975405

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               34-696, gnl|bosTau2|chr5 (73145053-73145695)
               

               
               34-696, gnl|Hg17|chr22 (42710499-42711166)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-696, gnl|bosTau2|chr5 (73145053-73145695)
               

               
               34-696, gnl|Hg17|chr22 (42710499-42711166)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	34-696, gnl\|bosTau2\|chr5 (73145053-73145695)
	34-696, gnl\|Hg17\|chr22 (42710499-42711166)