Non-Coding RNA Search

Ss1.1-rton1203b_n17.5

Sequence:


               
               TTTTTCCTGCTAAGTCAGTGGTGGCACAGGAATCTTAGCACGGGGCCTGGCCCCTCCCCG
CCCCAGTGGAGCTCAAACCACTTGCTTCCCACATAACAATGTCACTTCCATTCCCAGGGA
ATATCCTTACATAGAGAATGGAATATGCTGCAAACATTTCTAGATCCCTCCCTGTTTTTT
GTTTGTTTGTGTGTTTGTTTTTTCTTGTTTTTTCCCATGAAGGGACCCAGGCTTGACAGC
TTAATTCCAGATGTGCTTGCTGAGGACAGAGCCTGGGAGCGTCTTGTGGAGCCTGCTAGG
GCCCTGGCTCTCAGCACAGGGCGTGTTAGTCATTGGTGTCCAGTGAGGGCTCGGAGAGGA
TTTGGTTGGGCAGATGTGTGGACTGAGCAGCTCCCTGGAGAGGGGAGGGCAGGCTCAGCT
TTCCCGGGAAGCAGCTCCTGTTGATGTCCAGTGGAAACCTAGTGGGATTTTGAACGGGAA
CCCCAAGGTTGAGCCCCCTGCTAGGCAGCTGACGGGGATGCGGGGGCCAAGCACTCGGAT
TGCCAAGCCAGGAGGAGAGAGGGGCGAGGGTTGTCACAGCCCACCACGCCCTGCCCGGGT
TTCTCATTCGCACCACTATCGAGTCCTTTGCAGTGGTTTCACATGACACATGCATCATTG
ACTGTGCAGGATGTCACTTAAATCAGTTTGGGTTTGCTTTATTTTATTTTACATATATAT
TTTTTTGGTATCCTGTACATTGCAGTGGGTGTGAAGATAGTATTTTAATATTTGTACAAA
GTTTAATTTAATTTTAATTGTTCTATGTATATAACTGCATTTCTAAATAATAATAATAAT
AATAAAAAAAAAGTTCTTACAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCCTGCTAAGTCAGTGGTGGCACAGGAATCTTAGCACGGGGCCTGGCCCCTCCCCG
CCCCAGTGGAGCTCAAACCACTTGCTTCCCACATAACAATGTCACTTCCATTCCCAGGGA
ATATCCTTACATAGAGAATGGAATATGCTGCAAACATTTCTAGATCCCTCCCTGTTTTTT
GTTTGTTTGTGTGTTTGTTTTTTCTTGTTTTTTCCCATGAAGGGACCCAGGCTTGACAGC
TTAATTCCAGATGTGCTTGCTGAGGACAGAGCCTGGGAGCGTCTTGTGGAGCCTGCTAGG
GCCCTGGCTCTCAGCACAGGGCGTGTTAGTCATTGGTGTCCAGTGAGGGCTCGGAGAGGA
TTTGGTTGGGCAGATGTGTGGACTGAGCAGCTCCCTGGAGAGGGGAGGGCAGGCTCAGCT
TTCCCGGGAAGCAGCTCCTGTTGATGTCCAGTGGAAACCTAGTGGGATTTTGAACGGGAA
CCCCAAGGTTGAGCCCCCTGCTAGGCAGCTGACGGGGATGCGGGGGCCAAGCACTCGGAT
TGCCAAGCCAGGAGGAGAGAGGGGCGAGGGTTGTCACAGCCCACCACGCCCTGCCCGGGT
TTCTCATTCGCACCACTATCGAGTCCTTTGCAGTGGTTTCACATGACACATGCATCATTG
ACTGTGCAGGATGTCACTTAAATCAGTTTGGGTTTGCTTTATTTTATTTTACATATATAT
TTTTTTGGTATCCTGTACATTGCAGTGGGTGTGAAGATAGTATTTTAATATTTGTACAAA
GTTTAATTTAATTTTAATTGTTCTATGTATATAACTGCATTTCTAAATAATAATAATAAT
AATAAAAAAAAAGTTCTTACAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-847, gnl|bosTau2|chr10 (55946677-55945847)
               

               
               2-847, gnl|Hg17|chr14 (69250728-69251598)
               

               
               2-847, gnl|Mm7|chr12 (78842855-78843604)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-847, gnl|bosTau2|chr10 (55946677-55945847)
               

               
               2-847, gnl|Hg17|chr14 (69250728-69251598)
               

               
               2-847, gnl|Mm7|chr12 (78842855-78843604)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ill (0.351185)
               

               
               ton (0.351)
               

               
               nmm (0.265604)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               eep (0.122564)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               ton (0.351)
               

               
               nmm (0.265604)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               eep (0.122564)

	2-847, gnl\|bosTau2\|chr10 (55946677-55945847)
	2-847, gnl\|Hg17\|chr14 (69250728-69251598)
	2-847, gnl\|Mm7\|chr12 (78842855-78843604)

	ill (0.351185)
	ton (0.351)
	nmm (0.265604)
	bfe (0.149858)
	lyg (0.133103)
	eep (0.122564)