Ss1.1-rton1204b_e11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTGCGCGTCCCGCCAAGCTCTTTTTCTTCAGCACCTCCAGACCACTAGCGCCTGGTA CTCTTGCTCCACCAGGAACAAGCCATCATGTCTCGCCAATCGAGTGTGTCCTTACGCACC GGGGGCAGCCGTAGCTTCAGCGCCGCCTCTGCCATCACCCCGTCTGTCTCTCGCACCAGT TTCACCACTGTGTCTCGGTCTGGGGGTGGCGGTGGCGGCTTTGGCAGGGTCAGCCTTGGG GGTGCTTGTGGAGTTGGAGGCTATGGCAGCCGGAGCCTCTACAACCTGGGGGGTTCCAAG AGGATCTCCATCAGCGCTAGCGGTGGTGGCTTCAGGAACCGATTTGGTGCCGGTGCTGGA GGCGGCTATGGTTTTGGAGGTGGAGCCAGCAGCGGATTTGGTTTTGGCGGTGGAGCAGGT GGTGGCTTTGGGCTCGGTGGCGGTGCTGGCTTTGGAGGCGGCGCTGGCTTTGGAGGTGGC TTCGGTGGCCCTGGCTTCCCCGTCTGCCCCCCTGGAGGCATTCAAGAGGTCACCGTCAAC CAGAGTCTCCTGACTCCCCTTAACCTGCAAATCGACCCCACCATCCAGCGGGTGAGGACC GAGGAGCGGGAGCAGATCAAGACCCTCAACAACAAGTTCGCCTCCTTCATCGACAAGGTG CGGTTCCTGGAGCAGCAGAACAAGGTGCTGGACACCAAGTGGACCCTGCTGCAGGAGCAG GGCACCAAGACTGTCAGGCAGAACCTGGAGCCTTTGTTCGAGCAGTACATCAACAACCTC AGGAGACAGCTGGACAGCATCCTGGGGGAGAGAGGCCGCCTGGACTCAGAGCTGAGGAGC ATGCAGGACCTGGTGGAGGACTTCAAGAACAAGTATGAAGATGAAATCAACAAGCGTACC ACGGCCGAGAATGAATTTGTGATGCTGAAGAAGGATGTGGACGCCGCCTACATGAACAAG GTGGAGCTGGAAGCCAAGGTCGATGCACTGATGGATGAGATCAACTTCACGAAGATGTTC TTTGAGGCGGAGCTGTCCCAGATGCAGACACATGTCTCAGACACGTCTGTGGTCCTCTCT ATGGACAACAACCGCAACCTGGACCTGGACAGCATCATCGCCGAGGTCAAGGCCCAGTAC GAGGACATCGCCAACCGCAGCCGCACGGAAGCCGAGTCCTGGTACCAGACCAAGTACGAA GAGCTGCAGCAGACAGCTGGCCGGCATGGTGATGATCTCCGCAACACCAAGCATGAGATC TCTGAAATGAACAGGATGATCCAGAGGCTGAGAGCTGAGATCGACAACGTCAAGAAGCAG TGCGCCAACCTGCAGAACGCCATTGCCGATGCTGAGCAGCGTGGGGAGCTGGCCCTCAAG GACGCCAGGAACAAGCTGGCTGAGCTGGAGGATGCCCTGCAGAAGGCCAAGCAGGACATG GCCCGGCTGCTGAGGGAGTACCAGGAGCTGATGAACACCAAGCTGGCCCTGGACGTGGAG ATCGCCACCTACAGGAAGCTGCTGGAGGGCGAGGAGTGCAGATTGAGTGGAGAAGGTGTT GGACCAGTCAATATCTCGGTCGTCACAAACACCCTCTCCTCTGGCTATGGCGGTGGCAGT GGCTTTGGTGGCGGCCTCGGCGGTGGCCTCGGTGGTGGCCTCGGGGGCGGCCTCGGTGGA GGTCTGGGCGGTGGAATTGGTGGAGGTGGTGGCAGCAGCTACTACTCCAGCAGCAGCAGC GGGGGCGTAGGCCTTGGCGGTGGGCTCAGCGTGGGGGGCGCTGGCTTCAGTTCAAGCAGT GGCCGAAGCCTGGGCTTTGGCAGTGGCGGAGGCAGCAGCTCCAGTGTCAAATTTGTCTCC ACCACCTCCTCCTCCCGGAAGAGCTTCAAGAGCTAAGAGCCTCCAGCAAGTCACTGTCTC CCAGCTGCAGCAGCGGCTGGCTATGGCGCTCCCTCTTCTCGGTGGTTGCCCAAGCCAAGT TTTCTCTTTTTTCTGAAGCGTAGTCAATCAAGCCTATTGCAGACCCACGTTCTTTGGTTC CTGGAAGGTGCAGCCCCCACTTTCTAGTCTTCTGTGTCCCGATTCTACGCTCTGCTTCAA ATCAGCCTTTGGGTCTCTACAGCCTGCTCTTTGGAGATGAATCCAAAGTTTTCCAGTATC TAAACCATCAAAACAGAGTTCCCGCCCTGATTCCATCTGGTCTGACTACCTCCAGAGTGT GTTCAATAAAATGCTTTTCTATAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTGCGCGTCCCGCCAAGCTCTTTTTCTTCAGCACCTCCAGACCACTAGCGCCTGGTA CTCTTGCTCCACCAGGAACAAGCCATCATGTCTCGCCAATCGAGTGTGTCCTTACGCACC GGGGGCAGCCGTAGCTTCAGCGCCGCCTCTGCCATCACCCCGTCTGTCTCTCGCACCAGT TTCACCACTGTGTCTCGGTCTGGGGGTGGCGGTGGCGGCTTTGGCAGGGTCAGCCTTGGG GGTGCTTGTGGAGTTGGAGGCTATGGCAGCCGGAGCCTCTACAACCTGGGGGGTTCCAAG AGGATCTCCATCAGCGCTAGCGGTGGTGGCTTCAGGAACCGATTTGGTGCCGGTGCTGGA GGCGGCTATGGTTTTGGAGGTGGAGCCAGCAGCGGATTTGGTTTTGGCGGTGGAGCAGGT GGTGGCTTTGGGCTCGGTGGCGGTGCTGGCTTTGGAGGCGGCGCTGGCTTTGGAGGTGGC TTCGGTGGCCCTGGCTTCCCCGTCTGCCCCCCTGGAGGCATTCAAGAGGTCACCGTCAAC CAGAGTCTCCTGACTCCCCTTAACCTGCAAATCGACCCCACCATCCAGCGGGTGAGGACC GAGGAGCGGGAGCAGATCAAGACCCTCAACAACAAGTTCGCCTCCTTCATCGACAAGGTG CGGTTCCTGGAGCAGCAGAACAAGGTGCTGGACACCAAGTGGACCCTGCTGCAGGAGCAG GGCACCAAGACTGTCAGGCAGAACCTGGAGCCTTTGTTCGAGCAGTACATCAACAACCTC AGGAGACAGCTGGACAGCATCCTGGGGGAGAGAGGCCGCCTGGACTCAGAGCTGAGGAGC ATGCAGGACCTGGTGGAGGACTTCAAGAACAAGTATGAAGATGAAATCAACAAGCGTACC ACGGCCGAGAATGAATTTGTGATGCTGAAGAAGGATGTGGACGCCGCCTACATGAACAAG GTGGAGCTGGAAGCCAAGGTCGATGCACTGATGGATGAGATCAACTTCACGAAGATGTTC TTTGAGGCGGAGCTGTCCCAGATGCAGACACATGTCTCAGACACGTCTGTGGTCCTCTCT ATGGACAACAACCGCAACCTGGACCTGGACAGCATCATCGCCGAGGTCAAGGCCCAGTAC GAGGACATCGCCAACCGCAGCCGCACGGAAGCCGAGTCCTGGTACCAGACCAAGTACGAA GAGCTGCAGCAGACAGCTGGCCGGCATGGTGATGATCTCCGCAACACCAAGCATGAGATC TCTGAAATGAACAGGATGATCCAGAGGCTGAGAGCTGAGATCGACAACGTCAAGAAGCAG TGCGCCAACCTGCAGAACGCCATTGCCGATGCTGAGCAGCGTGGGGAGCTGGCCCTCAAG GACGCCAGGAACAAGCTGGCTGAGCTGGAGGATGCCCTGCAGAAGGCCAAGCAGGACATG GCCCGGCTGCTGAGGGAGTACCAGGAGCTGATGAACACCAAGCTGGCCCTGGACGTGGAG ATCGCCACCTACAGGAAGCTGCTGGAGGGCGAGGAGTGCAGATTGAGTGGAGAAGGTGTT GGACCAGTCAATATCTCGGTCGTCACAAACACCCTCTCCTCTGGCTATGGCGGTGGCAGT GGCTTTGGTGGCGGCCTCGGCGGTGGCCTCGGTGGTGGCCTCGGGGGCGGCCTCGGTGGA GGTCTGGGCGGTGGAATTGGTGGAGGTGGTGGCAGCAGCTACTACTCCAGCAGCAGCAGC GGGGGCGTAGGCCTTGGCGGTGGGCTCAGCGTGGGGGGCGCTGGCTTCAGTTCAAGCAGT GGCCGAAGCCTGGGCTTTGGCAGTGGCGGAGGCAGCAGCTCCAGTGTCAAATTTGTCTCC ACCACCTCCTCCTCCCGGAAGAGCTTCAAGAGCTAAGAGCCTCCAGCAAGTCACTGTCTC CCAGCTGCAGCAGCGGCTGGCTATGGCGCTCCCTCTTCTCGGTGGTTGCCCAAGCCAAGT TTTCTCTTTTTTCTGAAGCGTAGTCAATCAAGCCTATTGCAGACCCACGTTCTTTGGTTC CTGGAAGGTGCAGCCCCCACTTTCTAGTCTTCTGTGTCCCGATTCTACGCTCTGCTTCAA ATCAGCCTTTGGGTCTCTACAGCCTGCTCTTTGGAGATGAATCCAAAGTTTTCCAGTATC TAAACCATCAAAACAGAGTTCCCGCCCTGATTCCATCTGGTCTGACTACCTCCAGAGTGT GTTCAATAAAATGCTTTTCTATAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 325-444, + strand, RNAz p=0.909759 | |
| 1319-1541, + strand, RNAz p=0.652864 | |
| 1619-1738, - strand, RNAz p=0.979442 | |
| 1814-1958, - strand, RNAz p=0.997577 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 325-444, + strand, RNAz p=0.909759 | |
| 1319-1541, + strand, RNAz p=0.652864 | |
| 1619-1738, - strand, RNAz p=0.979442 | |
| 1814-1958, - strand, RNAz p=0.997577 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 10-660, gnl|bosTau2|chr5 (20026977-20026339) | |
| 10-660, gnl|Hg17|chr12 (51200422-51199790) | |
| 10-660, gnl|Mm7|chr15 (101699040-101698428) | |
| 679-875, gnl|bosTau2|chr5 (19973390-19973199) | |
| 679-875, gnl|Hg17|chr12 (51130650-51130452) | |
| 679-875, gnl|Mm7|chr15 (101632405-101632209) | |
| 1029-1194, gnl|bosTau2|chr5 (20024145-20023980) | |
| 1029-1194, gnl|canFam2|chr27 (5574008-5573836) | |
| 1029-1194, gnl|danRer3|chr6 (21616565-21616393) | |
| 1029-1194, gnl|dasNov1|scaffold_48798 (11667-11495) | |
| 1029-1194, gnl|echTel1|scaffold_312604 (37802-37630) | |
| 1029-1194, gnl|fr1|chrUn (50208033-50208204) | |
| 1029-1194, gnl|galGal2|chrUn (7823243-7823071) | |
| 1029-1194, gnl|hg17|chr12 (51197637-51197809) | |
| 1029-1194, gnl|Hg17|chr12 (51197806-51197641) | |
| 1029-1194, gnl|loxAfr1|scaffold_14351 (1088-1260) | |
| 1029-1194, gnl|mm7|chr15 (101696404-101696576) | |
| 1029-1194, gnl|Mm7|chr15 (101696573-101696408) | |
| 1029-1194, gnl|monDom2|scaffold_264 (505630-505802) | |
| 1029-1194, gnl|oryCun1|scaffold_193848 (11033-11205) | |
| 1029-1194, gnl|panTro1|chr10 (52421219-52421391) | |
| 1029-1194, gnl|rheMac2|chr11 (49599651-49599823) | |
| 1029-1194, gnl|rn3|chr7 (140550433-140550605) | |
| 1029-1194, gnl|tetNig1|chrUn_random (43154108-43153937) | |
| 1029-1194, gnl|xenTro1|scaffold_312 (1079173-1079342) | |
| 1318-1560, gnl|bosTau2|chr5 (20093857-20093615) | |
| 1318-1560, gnl|Hg17|chr12 (51267905-51267663) | |
| 1318-1560, gnl|Mm7|chr15 (101764553-101764314) | |
| 1319-1556, gnl|bosTau2|chr5 (20023278-20023043) | |
| 1319-1556, gnl|Hg17|chr12 (51196910-51196681) | |
| 1319-1556, gnl|Mm7|chr15 (101695255-101695026) | |
| 1405-1541, gnl|bosTau2|chr13 (19902353-19902489) | |
| 1405-1541, gnl|Hg17|chr10 (17317258-17317394) | |
| 1405-1541, gnl|Mm7|chr2 (13519260-13519396) | |
| 1579-2237, gnl|bosTau2|chr5 (20021620-20020951) | |
| 1579-2237, gnl|Hg17|chr12 (51195289-51194636) | |
| 1579-2237, gnl|Mm7|chr15 (101693877-101693235) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-660, gnl|bosTau2|chr5 (20026977-20026339) | |
| 10-660, gnl|Hg17|chr12 (51200422-51199790) | |
| 10-660, gnl|Mm7|chr15 (101699040-101698428) | |
| 679-875, gnl|bosTau2|chr5 (19973390-19973199) | |
| 679-875, gnl|Hg17|chr12 (51130650-51130452) | |
| 679-875, gnl|Mm7|chr15 (101632405-101632209) | |
| 1029-1194, gnl|bosTau2|chr5 (20024145-20023980) | |
| 1029-1194, gnl|canFam2|chr27 (5574008-5573836) | |
| 1029-1194, gnl|danRer3|chr6 (21616565-21616393) | |
| 1029-1194, gnl|dasNov1|scaffold_48798 (11667-11495) | |
| 1029-1194, gnl|echTel1|scaffold_312604 (37802-37630) | |
| 1029-1194, gnl|fr1|chrUn (50208033-50208204) | |
| 1029-1194, gnl|galGal2|chrUn (7823243-7823071) | |
| 1029-1194, gnl|hg17|chr12 (51197637-51197809) | |
| 1029-1194, gnl|Hg17|chr12 (51197806-51197641) | |
| 1029-1194, gnl|loxAfr1|scaffold_14351 (1088-1260) | |
| 1029-1194, gnl|mm7|chr15 (101696404-101696576) | |
| 1029-1194, gnl|Mm7|chr15 (101696573-101696408) | |
| 1029-1194, gnl|monDom2|scaffold_264 (505630-505802) | |
| 1029-1194, gnl|oryCun1|scaffold_193848 (11033-11205) | |
| 1029-1194, gnl|panTro1|chr10 (52421219-52421391) | |
| 1029-1194, gnl|rheMac2|chr11 (49599651-49599823) | |
| 1029-1194, gnl|rn3|chr7 (140550433-140550605) | |
| 1029-1194, gnl|tetNig1|chrUn_random (43154108-43153937) | |
| 1029-1194, gnl|xenTro1|scaffold_312 (1079173-1079342) | |
| 1318-1560, gnl|bosTau2|chr5 (20093857-20093615) | |
| 1318-1560, gnl|Hg17|chr12 (51267905-51267663) | |
| 1318-1560, gnl|Mm7|chr15 (101764553-101764314) | |
| 1319-1556, gnl|bosTau2|chr5 (20023278-20023043) | |
| 1319-1556, gnl|Hg17|chr12 (51196910-51196681) | |
| 1319-1556, gnl|Mm7|chr15 (101695255-101695026) | |
| 1405-1541, gnl|bosTau2|chr13 (19902353-19902489) | |
| 1405-1541, gnl|Hg17|chr10 (17317258-17317394) | |
| 1405-1541, gnl|Mm7|chr2 (13519260-13519396) | |
| 1579-2237, gnl|bosTau2|chr5 (20021620-20020951) | |
| 1579-2237, gnl|Hg17|chr12 (51195289-51194636) | |
| 1579-2237, gnl|Mm7|chr15 (101693877-101693235) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ton (6.49351) | |
| nep (4.4142) | |
| eep (0.980512) | |
| csk (0.70373) | |
| eru (0.360144) | |
| eye (0.341006) | |
| cga (0.279096) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| nmm (0.132802) | |
| thg (0.126791) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (6.49351) | |
| nep (4.4142) | |
| eep (0.980512) | |
| csk (0.70373) | |
| eru (0.360144) | |
| eye (0.341006) | |
| cga (0.279096) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| nmm (0.132802) | |
| thg (0.126791) |