Non-Coding RNA Search

Ss1.1-rton1204b_g17.5

Sequence:


               
               TTTTCCGGGGGACTGATACATGCTTTAAGCAATGTCGACACCCCATCAAGACCCCCAGCC
TAGTCATTTTCTTGTATTTTTTCTGTTCACAGTATTTTTGTGTGTGTGTGTGCTTGTTTT
GGCAGCTCATTTTTGGCTGTATTATATATCGAGTGACGAATTGATCTTTTTTTTTTTTTT
TTTGGGCCCCCCCTAAGGGATATGAATTGTTTCTTTCTTGTGTTATAATTCTGCTTGTGA
ATAGCTGGAGCAAACCTGGGACTGACACACGTAAGCCAGGGCTGCAAAGTGCCCAGAGAG
CCAGTTGAGTTTCCTTGTCCCAGACAGGCGGACCTACTGAGTCTCTGAGCTTTTCAGCCC
AGATCTTTGCAAGGCTAGAAATGCCACCGACACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCGGGGGACTGATACATGCTTTAAGCAATGTCGACACCCCATCAAGACCCCCAGCC
TAGTCATTTTCTTGTATTTTTTCTGTTCACAGTATTTTTGTGTGTGTGTGTGCTTGTTTT
GGCAGCTCATTTTTGGCTGTATTATATATCGAGTGACGAATTGATCTTTTTTTTTTTTTT
TTTGGGCCCCCCCTAAGGGATATGAATTGTTTCTTTCTTGTGTTATAATTCTGCTTGTGA
ATAGCTGGAGCAAACCTGGGACTGACACACGTAAGCCAGGGCTGCAAAGTGCCCAGAGAG
CCAGTTGAGTTTCCTTGTCCCAGACAGGCGGACCTACTGAGTCTCTGAGCTTTTCAGCCC
AGATCTTTGCAAGGCTAGAAATGCCACCGACACCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-386, + strand, RNAz p=0.988237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-386, + strand, RNAz p=0.988237

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               284-366, + strand, RNAmicro p=0.999782

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               284-366, + strand, RNAmicro p=0.999782

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               270-386, BX431223 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX431223.2|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, BX431224 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX431224.2|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, K-EST0210707 B1T694954 Homo sapiens cDNA clone B1T694954-31-E06 5', 
(gb|CB153321.1|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, AGENCOURT_14364695 NIH_MGC_181 Homo sapiens cDNA clone 
(gb|CD515306.1|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, 17000600021897 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN420871.1|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, TC102106 Human adult whole brain, large insert, pCMV expression 
(gb|DN992489.1|), blast E-value=2e-18, identity=86.44%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               270-386, BX431223 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX431223.2|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, BX431224 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone 
(emb|BX431224.2|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, K-EST0210707 B1T694954 Homo sapiens cDNA clone B1T694954-31-E06 5', 
(gb|CB153321.1|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, AGENCOURT_14364695 NIH_MGC_181 Homo sapiens cDNA clone 
(gb|CD515306.1|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, 17000600021897 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN420871.1|), blast E-value=2e-18, identity=86.44% 
               

               
               270-386, TC102106 Human adult whole brain, large insert, pCMV expression 
(gb|DN992489.1|), blast E-value=2e-18, identity=86.44%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-386, gnl|bosTau2|chr5 (44156025-44155650)
               

               
               1-386, gnl|Hg17|chr22 (34460201-34459841)
               

               
               1-386, gnl|Mm7|chr15 (77162792-77162486)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-386, gnl|bosTau2|chr5 (44156025-44155650)
               

               
               1-386, gnl|Hg17|chr22 (34460201-34459841)
               

               
               1-386, gnl|Mm7|chr15 (77162792-77162486)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ton (0.1755)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               ecc (0.115035)

	270-386, BX431223 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX431223.2\|), blast E-value=2e-18, identity=86.44%
	270-386, BX431224 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone (emb\|BX431224.2\|), blast E-value=2e-18, identity=86.44%
	270-386, K-EST0210707 B1T694954 Homo sapiens cDNA clone B1T694954-31-E06 5', (gb\|CB153321.1\|), blast E-value=2e-18, identity=86.44%
	270-386, AGENCOURT_14364695 NIH_MGC_181 Homo sapiens cDNA clone (gb\|CD515306.1\|), blast E-value=2e-18, identity=86.44%
	270-386, 17000600021897 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN420871.1\|), blast E-value=2e-18, identity=86.44%
	270-386, TC102106 Human adult whole brain, large insert, pCMV expression (gb\|DN992489.1\|), blast E-value=2e-18, identity=86.44%

	1-386, gnl\|bosTau2\|chr5 (44156025-44155650)
	1-386, gnl\|Hg17\|chr22 (34460201-34459841)
	1-386, gnl\|Mm7\|chr15 (77162792-77162486)