Non-Coding RNA Search

Ss1.1-rton1204b_h15.5

Sequence:


               
               GCCTACACGCTTCGCTCGCCCGCTCCCGCCCCGGCCCCGCGCCCGGCCATGGCGGAGCCC
TCGCCCGCCCGACGCCCGGTGCCCCTCATCGAGTCGGAGCTGTACTTCCTCATCGCCCGG
TACCTATCGGCCGGCCCGTGTCGGAGAGCCGCCCAGGTGCTGGTGCAGGAGCTGGAGCAG
TACCAGCTGCTGCCGAAGAGGTTGGATTGGGAGGGCAACGAGCACAACAGGAGCTACGAG
GAATTGGTCTTGTCCAATAAGCATGTGGCTCCTGATCATCTGTTGCAAATCTGCCAGCGC
ATCGGTCCCATGTTGGATAAAGAAATTCCACCCAGTATTTCAAGAGTCACTTCTTTACTT
GGTGCAGGAAGGCAGTCTTTGCTACGTACAGCAAAAGGTACCTTAATTTGAAGAAGTGTT
CTGCTTTGTATTACTAGCTTAATAATTATAATTGTGAAGTAATGTAAGCATTGTGGAAGA
AAGGTGATATGTAACTAAAAACCATGCTGTGGACTATAAAATTCTCTGCATTTAGCATAG
ACATTGAATTTTATTATATCAGTGTTTAATGGGTCCTTCTGCATTTAAAAAAATGATAAA
GGTATAGATGTTAAGCTCAAAAGCTTGAATTTATTCTGAGATGTGTTTGAGGTTTTATCA
ATGTGAGTTCTTAATTTTTTCATTTTGTAGCTCACTTATAACTTCATTGAATGTAATTGT
ATGTGTCTAATAAACTCTTTAAATGCTAGAAGTATTTTATTTGATATTTAGATTATGCAA
GCCCTTTGTTATAAGGGGAAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTACACGCTTCGCTCGCCCGCTCCCGCCCCGGCCCCGCGCCCGGCCATGGCGGAGCCC
TCGCCCGCCCGACGCCCGGTGCCCCTCATCGAGTCGGAGCTGTACTTCCTCATCGCCCGG
TACCTATCGGCCGGCCCGTGTCGGAGAGCCGCCCAGGTGCTGGTGCAGGAGCTGGAGCAG
TACCAGCTGCTGCCGAAGAGGTTGGATTGGGAGGGCAACGAGCACAACAGGAGCTACGAG
GAATTGGTCTTGTCCAATAAGCATGTGGCTCCTGATCATCTGTTGCAAATCTGCCAGCGC
ATCGGTCCCATGTTGGATAAAGAAATTCCACCCAGTATTTCAAGAGTCACTTCTTTACTT
GGTGCAGGAAGGCAGTCTTTGCTACGTACAGCAAAAGGTACCTTAATTTGAAGAAGTGTT
CTGCTTTGTATTACTAGCTTAATAATTATAATTGTGAAGTAATGTAAGCATTGTGGAAGA
AAGGTGATATGTAACTAAAAACCATGCTGTGGACTATAAAATTCTCTGCATTTAGCATAG
ACATTGAATTTTATTATATCAGTGTTTAATGGGTCCTTCTGCATTTAAAAAAATGATAAA
GGTATAGATGTTAAGCTCAAAAGCTTGAATTTATTCTGAGATGTGTTTGAGGTTTTATCA
ATGTGAGTTCTTAATTTTTTCATTTTGTAGCTCACTTATAACTTCATTGAATGTAATTGT
ATGTGTCTAATAAACTCTTTAAATGCTAGAAGTATTTTATTTGATATTTAGATTATGCAA
GCCCTTTGTTATAAGGGGAAGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BPZ1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BPZ1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               600-717, + strand, RNAz p=0.730196

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               600-717, + strand, RNAz p=0.730196

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001007246, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001007246, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               21-198, gnl|bosTau2|chr1 (89156362-89156538)
               

               
               21-198, gnl|Hg17|chr21 (39607169-39607001)
               


               
               246-804, gnl|bosTau2|chr1 (89175217-89175776)
               

               
               246-804, gnl|Hg17|chr21 (39592379-39591817)
               

               
               246-804, gnl|Mm7|chr16 (96405121-96404600)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-198, gnl|bosTau2|chr1 (89156362-89156538)
               

               
               21-198, gnl|Hg17|chr21 (39607169-39607001)
               


               
               246-804, gnl|bosTau2|chr1 (89175217-89175776)
               

               
               246-804, gnl|Hg17|chr21 (39592379-39591817)
               

               
               246-804, gnl|Mm7|chr16 (96405121-96404600)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ton (0.1755)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	21-198, gnl\|bosTau2\|chr1 (89156362-89156538)
	21-198, gnl\|Hg17\|chr21 (39607169-39607001)

	246-804, gnl\|bosTau2\|chr1 (89175217-89175776)
	246-804, gnl\|Hg17\|chr21 (39592379-39591817)
	246-804, gnl\|Mm7\|chr16 (96405121-96404600)

	ton (0.1755)
	nco (0.161734)
	ski (0.146735)
	ese (0.126502)
	ecc (0.115035)
	spc (0.113366)