Non-Coding RNA Search

Ss1.1-rton1206b_a21.5

Sequence:


               
               AAGAACTGTGGTTTATTCAGGAAGGGGAGGATAAGTAACAATTGCCCAGTGGTAGAAACC
CCTGCCCAGGTGACATGCACTGAAGACGGCCTGAGAATCCCCTGCTGGTGCCCAGGAGGG
GAGCTTCTGCTCTTCCGTCTGAAGCCCTGAGGTGCTTCCTTAGCAGCCTCTGGAGGGAAG
AGGCAGAGCAGCCTCAGGGAAGAAAGCTTTGGCCATCAGGAGTGGCTCCCAGCATGCGAC
AGGCTGAAGGAGGGAGAAGCTTCTTCTGCCTCCATGACGGGCCTTGGAGAGAAGGCGAAG
GTGGAGTGTGGCAGCAGGTGAGCCCATTGTGCTTATCCCTTCCTGGTCCGGACGAATGGA
GACGCTCTTATTTGCTCTTGGGTGGGCACTTCTGCTGGCAGGGTTGGGGAGGTGGCACGG
GAGGGCATTTCTGCTGGCACTGCTGAGGTGGGCACGGCTCAGGACACTTTGGAGGTGGGC
AGGGCTCTGGGCACTTTGGAGGAGGGCAGGGCTCCGGGCACTTTGGAGGAGGGCAGGGCT
CCGGGCACTTTGGAGGAGGGCACACTGGAGGTGGCTGGCAGGGCTGCTTGCACTGCTGCT
GTTGATAAGACATGTCTCTGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAACTGTGGTTTATTCAGGAAGGGGAGGATAAGTAACAATTGCCCAGTGGTAGAAACC
CCTGCCCAGGTGACATGCACTGAAGACGGCCTGAGAATCCCCTGCTGGTGCCCAGGAGGG
GAGCTTCTGCTCTTCCGTCTGAAGCCCTGAGGTGCTTCCTTAGCAGCCTCTGGAGGGAAG
AGGCAGAGCAGCCTCAGGGAAGAAAGCTTTGGCCATCAGGAGTGGCTCCCAGCATGCGAC
AGGCTGAAGGAGGGAGAAGCTTCTTCTGCCTCCATGACGGGCCTTGGAGAGAAGGCGAAG
GTGGAGTGTGGCAGCAGGTGAGCCCATTGTGCTTATCCCTTCCTGGTCCGGACGAATGGA
GACGCTCTTATTTGCTCTTGGGTGGGCACTTCTGCTGGCAGGGTTGGGGAGGTGGCACGG
GAGGGCATTTCTGCTGGCACTGCTGAGGTGGGCACGGCTCAGGACACTTTGGAGGTGGGC
AGGGCTCTGGGCACTTTGGAGGAGGGCAGGGCTCCGGGCACTTTGGAGGAGGGCAGGGCT
CCGGGCACTTTGGAGGAGGGCACACTGGAGGTGGCTGGCAGGGCTGCTTGCACTGCTGCT
GTTGATAAGACATGTCTCTGGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SPR2D_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               SPR2D_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-210, - strand, RNAz p=0.780975

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-210, - strand, RNAz p=0.780975

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005988, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005988, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-529, gnl|bosTau2|chr3 (12800381-12800908)
               

               
               3-529, gnl|Hg17|chr1 (149841670-149842230)
               

               
               3-529, gnl|Mm7|chr3 (92433211-92432690)
               


               
               340-522, gnl|bosTau2|chr21 (15953678-15953490)
               

               
               340-522, gnl|Hg17|chr1 (149935407-149935640)
               

               
               340-522, gnl|Mm7|chr3 (92515011-92514772)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-529, gnl|bosTau2|chr3 (12800381-12800908)
               

               
               3-529, gnl|Hg17|chr1 (149841670-149842230)
               

               
               3-529, gnl|Mm7|chr3 (92433211-92432690)
               


               
               340-522, gnl|bosTau2|chr21 (15953678-15953490)
               

               
               340-522, gnl|Hg17|chr1 (149935407-149935640)
               

               
               340-522, gnl|Mm7|chr3 (92515011-92514772)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ton (5.61601)
               

               
               eye (0.170503)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (5.61601)
               

               
               eye (0.170503)

	3-529, gnl\|bosTau2\|chr3 (12800381-12800908)
	3-529, gnl\|Hg17\|chr1 (149841670-149842230)
	3-529, gnl\|Mm7\|chr3 (92433211-92432690)

	340-522, gnl\|bosTau2\|chr21 (15953678-15953490)
	340-522, gnl\|Hg17\|chr1 (149935407-149935640)
	340-522, gnl\|Mm7\|chr3 (92515011-92514772)