Non-Coding RNA Search

Ss1.1-rton1206b_p1.5

Sequence:


               
               CCGGCTGCTGCGGGGACTCCGGCTGCTGCGGCTGCTGCGGCGACTCGGGCTGCTGCGGCT
CCAGCTCCACCAGCTGCTGCTGCTTTCCCAGGAGGCGCCGCCGAGGGGGCAGGCGCGGCT
GCTGCTGCTGCAGGGACAGCAGCCAGGGGTCCCAGTACTCTAGCAGCACCTCCGGCTGCT
GTGGCGGCTGCTGAGGCCACGGCCAAGGCCGCCCCACACCTGTGTGAGAGCCGCTCCCAC
CCCGTGCCTCCGCCTTTCGACGCCTCGCCCATCCCCGTGGGATGGGGCCTCAGAGTTTGC
TTCCCTTAAAGCTTGGGTGTTCAGACACCCACCCTATTCTCAGCCTCGTCAAACTCCCTG
ACCCCCGTGTGCTTTTTCTCCTCGGGAACCAGAAAGCCATGGGTGGGACACTGGACTCTA
CCTACTGTCTGCAGGGGCTTGCACACAGTAGGTGCTGAATAAATGGCCTACTGATTCGAT
TGCCCTTTGAGGACATGTCATAATAAAGCTTCTACCTCCTGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCTGCTGCGGGGACTCCGGCTGCTGCGGCTGCTGCGGCGACTCGGGCTGCTGCGGCT
CCAGCTCCACCAGCTGCTGCTGCTTTCCCAGGAGGCGCCGCCGAGGGGGCAGGCGCGGCT
GCTGCTGCTGCAGGGACAGCAGCCAGGGGTCCCAGTACTCTAGCAGCACCTCCGGCTGCT
GTGGCGGCTGCTGAGGCCACGGCCAAGGCCGCCCCACACCTGTGTGAGAGCCGCTCCCAC
CCCGTGCCTCCGCCTTTCGACGCCTCGCCCATCCCCGTGGGATGGGGCCTCAGAGTTTGC
TTCCCTTAAAGCTTGGGTGTTCAGACACCCACCCTATTCTCAGCCTCGTCAAACTCCCTG
ACCCCCGTGTGCTTTTTCTCCTCGGGAACCAGAAAGCCATGGGTGGGACACTGGACTCTA
CCTACTGTCTGCAGGGGCTTGCACACAGTAGGTGCTGAATAAATGGCCTACTGATTCGAT
TGCCCTTTGAGGACATGTCATAATAAAGCTTCTACCTCCTGAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IAD7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IAD7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               338-493, - strand, RNAz p=0.964376

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-493, - strand, RNAz p=0.964376

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-525, gnl|bosTau2|chr3 (13870349-13869838)
               

               
               2-525, gnl|Hg17|chr1 (149301052-149301557)
               

               
               2-525, gnl|Mm7|chr3 (93120743-93120238)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-525, gnl|bosTau2|chr3 (13870349-13869838)
               

               
               2-525, gnl|Hg17|chr1 (149301052-149301557)
               

               
               2-525, gnl|Mm7|chr3 (93120743-93120238)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (3.51)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (3.51)

	2-525, gnl\|bosTau2\|chr3 (13870349-13869838)
	2-525, gnl\|Hg17\|chr1 (149301052-149301557)
	2-525, gnl\|Mm7\|chr3 (93120743-93120238)