Ss1.1-rton1207b_i21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACACATCTCAGAGACATCCGTCATCGTGAAGATGGACAACAGCCGGGACCTGAATGTTG ACGGGATCATCGCCGACATCAAGGCTCAGTATGAAGAGATTGCCAGGCGCAGTCGGGCTG ATGCTGAGTCCTGGTACCAGACCAAGTATGAGGAGATGCGGGTGACAGCTGGCCAACACT GTGACAACCTGCGCAGCACTCGTGATGAGATCAATGAGCTGAACCGCCTGATCCAGAGGC TGAATGCAGAGATCGAGCACGCCAAGGCTCAGCGGGCCAAGCTGGAAGCCGCGGTGGCCC AGGCGGAGCAGCAGGGCGAGGCGGCCCTCAATGATGCCAAGAGCAAGCTGGCAGATCTAG AGGGCGCCCTTCAGCAGGCCAAGCAGGACGTGGCGCGCCAGCTGCGTGAGTACCAGGAGC TGATGAATGTCAAGTTGGCCCTGGACATCGAGATCGCCACCTACAGGCGCCTGCTAGAAG GCGAGGAGATCCGGATCTGTGAAGGTGTTGGACCAGTAGACATATCCGTAAGCAGCTCCC GGGGCGGCGTGGTGTGCGGGCCTGATGCCCTGGTCACCAGCTCCGGCCTCTCCCGTGGCG GCGTCGCTTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACACATCTCAGAGACATCCGTCATCGTGAAGATGGACAACAGCCGGGACCTGAATGTTG ACGGGATCATCGCCGACATCAAGGCTCAGTATGAAGAGATTGCCAGGCGCAGTCGGGCTG ATGCTGAGTCCTGGTACCAGACCAAGTATGAGGAGATGCGGGTGACAGCTGGCCAACACT GTGACAACCTGCGCAGCACTCGTGATGAGATCAATGAGCTGAACCGCCTGATCCAGAGGC TGAATGCAGAGATCGAGCACGCCAAGGCTCAGCGGGCCAAGCTGGAAGCCGCGGTGGCCC AGGCGGAGCAGCAGGGCGAGGCGGCCCTCAATGATGCCAAGAGCAAGCTGGCAGATCTAG AGGGCGCCCTTCAGCAGGCCAAGCAGGACGTGGCGCGCCAGCTGCGTGAGTACCAGGAGC TGATGAATGTCAAGTTGGCCCTGGACATCGAGATCGCCACCTACAGGCGCCTGCTAGAAG GCGAGGAGATCCGGATCTGTGAAGGTGTTGGACCAGTAGACATATCCGTAAGCAGCTCCC GGGGCGGCGTGGTGTGCGGGCCTGATGCCCTGGTCACCAGCTCCGGCCTCTCCCGTGGCG GCGTCGCTTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 43-146, + strand, RNAz p=0.710559 | |
| 370-494, - strand, RNAz p=0.619089 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 43-146, + strand, RNAz p=0.710559 | |
| 370-494, - strand, RNAz p=0.619089 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-146, gnl|bosTau2|chr5 (19850024-19849879) | |
| 1-146, gnl|canFam2|chr27 (5692070-5691820) | |
| 1-146, gnl|danRer3|chr6 (21616593-21616393) | |
| 1-146, gnl|dasNov1|scaffold_48798 (11774-11511) | |
| 1-146, gnl|echTel1|scaffold_299533 (5347-5121) | |
| 1-146, gnl|fr1|chrUn (50193833-50194019) | |
| 1-146, gnl|galGal2|chrUn (7823295-7823087) | |
| 1-146, gnl|hg17|chr12 (51061338-51061580) | |
| 1-146, gnl|Hg17|chr12 (51061557-51061412) | |
| 1-146, gnl|loxAfr1|scaffold_14351 (1011-1244) | |
| 1-146, gnl|mm7|chr15 (101514726-101514951) | |
| 1-146, gnl|Mm7|chr15 (101514928-101514783) | |
| 1-146, gnl|monDom2|scaffold_264 (476660-476954) | |
| 1-146, gnl|oryCun1|scaffold_205889 (21888-22099) | |
| 1-146, gnl|panTro1|chr10 (52284592-52284834) | |
| 1-146, gnl|rheMac2|chr11 (49484988-49485232) | |
| 1-146, gnl|rn3|chr7 (140359923-140360143) | |
| 1-146, gnl|tetNig1|chrUn_random (43166828-43166642) | |
| 1-146, gnl|xenTro1|scaffold_312 (1089080-1089281) | |
| 270-506, gnl|bosTau2|chr5 (20374691-20374454) | |
| 270-506, gnl|Hg17|chr12 (51578953-51578717) | |
| 270-506, gnl|Mm7|chr15 (101984233-101983996) | |
| 370-494, gnl|bosTau2|chr13 (19902366-19902490) | |
| 370-494, gnl|canFam2|chr2 (22508665-22508523) | |
| 370-494, gnl|danRer3|chr24 (29509616-29509753) | |
| 370-494, gnl|dasNov1|scaffold_103823 (3528-3671) | |
| 370-494, gnl|echTel1|scaffold_89498 (2636-2779) | |
| 370-494, gnl|fr1|chrUn (164748044-164747901) | |
| 370-494, gnl|galGal2|chr2 (19101683-19101540) | |
| 370-494, gnl|hg17|chr10 (17317261-17317404) | |
| 370-494, gnl|Hg17|chr10 (17317271-17317395) | |
| 370-494, gnl|loxAfr1|scaffold_72049 (6912-7045) | |
| 370-494, gnl|mm7|chr2 (13519263-13519406) | |
| 370-494, gnl|Mm7|chr2 (13519273-13519397) | |
| 370-494, gnl|monDom2|scaffold_7 (52315440-52315297) | |
| 370-494, gnl|oryCun1|scaffold_178329 (51113-51256) | |
| 370-494, gnl|panTro1|chr8_random (14384825-14384682) | |
| 370-494, gnl|rheMac2|chr4 (137315649-137315787) | |
| 370-494, gnl|rn3|chr17 (87864013-87864156) | |
| 370-494, gnl|tetNig1|chrUn_random (16823858-16823721) | |
| 370-494, gnl|xenTro1|scaffold_553 (743873-744012) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-146, gnl|bosTau2|chr5 (19850024-19849879) | |
| 1-146, gnl|canFam2|chr27 (5692070-5691820) | |
| 1-146, gnl|danRer3|chr6 (21616593-21616393) | |
| 1-146, gnl|dasNov1|scaffold_48798 (11774-11511) | |
| 1-146, gnl|echTel1|scaffold_299533 (5347-5121) | |
| 1-146, gnl|fr1|chrUn (50193833-50194019) | |
| 1-146, gnl|galGal2|chrUn (7823295-7823087) | |
| 1-146, gnl|hg17|chr12 (51061338-51061580) | |
| 1-146, gnl|Hg17|chr12 (51061557-51061412) | |
| 1-146, gnl|loxAfr1|scaffold_14351 (1011-1244) | |
| 1-146, gnl|mm7|chr15 (101514726-101514951) | |
| 1-146, gnl|Mm7|chr15 (101514928-101514783) | |
| 1-146, gnl|monDom2|scaffold_264 (476660-476954) | |
| 1-146, gnl|oryCun1|scaffold_205889 (21888-22099) | |
| 1-146, gnl|panTro1|chr10 (52284592-52284834) | |
| 1-146, gnl|rheMac2|chr11 (49484988-49485232) | |
| 1-146, gnl|rn3|chr7 (140359923-140360143) | |
| 1-146, gnl|tetNig1|chrUn_random (43166828-43166642) | |
| 1-146, gnl|xenTro1|scaffold_312 (1089080-1089281) | |
| 270-506, gnl|bosTau2|chr5 (20374691-20374454) | |
| 270-506, gnl|Hg17|chr12 (51578953-51578717) | |
| 270-506, gnl|Mm7|chr15 (101984233-101983996) | |
| 370-494, gnl|bosTau2|chr13 (19902366-19902490) | |
| 370-494, gnl|canFam2|chr2 (22508665-22508523) | |
| 370-494, gnl|danRer3|chr24 (29509616-29509753) | |
| 370-494, gnl|dasNov1|scaffold_103823 (3528-3671) | |
| 370-494, gnl|echTel1|scaffold_89498 (2636-2779) | |
| 370-494, gnl|fr1|chrUn (164748044-164747901) | |
| 370-494, gnl|galGal2|chr2 (19101683-19101540) | |
| 370-494, gnl|hg17|chr10 (17317261-17317404) | |
| 370-494, gnl|Hg17|chr10 (17317271-17317395) | |
| 370-494, gnl|loxAfr1|scaffold_72049 (6912-7045) | |
| 370-494, gnl|mm7|chr2 (13519263-13519406) | |
| 370-494, gnl|Mm7|chr2 (13519273-13519397) | |
| 370-494, gnl|monDom2|scaffold_7 (52315440-52315297) | |
| 370-494, gnl|oryCun1|scaffold_178329 (51113-51256) | |
| 370-494, gnl|panTro1|chr8_random (14384825-14384682) | |
| 370-494, gnl|rheMac2|chr4 (137315649-137315787) | |
| 370-494, gnl|rn3|chr17 (87864013-87864156) | |
| 370-494, gnl|tetNig1|chrUn_random (16823858-16823721) | |
| 370-494, gnl|xenTro1|scaffold_553 (743873-744012) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) |