Non-Coding RNA Search

Ss1.1-rton1209b_a7.5

Sequence:


               
               TGGTGGCCTCCTTACCTAAAAAGACCCTGCAGGCAGATAGAAGGATGGAAGTGAAACACA
GCTTCAGACCGGATGGACTTGGATCAAGCAGGAGTGTCCTAACAAACCGTTAGGAACAAC
CCAGTGGAAACTGATTTTTTTTTTTTTTTAATGGTAGTCACAGAAAACACCTGATACTCG
TATTTTCTTCTATAGAGTCAGAGACTTGAGAAAAAAAATCACTGACATTTAAATTATAAT
GTCTGTTGATAAAAACATGGCAGTCACAATATTAGATAATAGCATTTTCAGAATTCTTAG
TACAGAAGCAAAGCACTGGCTTTGTAAAAGGCCAAAATTTTATTTCCTACAAACTTAAGG
ATATGTAAGGCATGGAGAGATTAACATAAAAATAGCTTGTGGTATTGAGTTTTAATTTAT
ATATGTCCACAAAAGTACAGACTTGTACCAAACAAAACCTGGAAACTTGACAGCCCACAG
TTATGAGACCAGGTAGCCATAGTTCTTAGGACAGGGAGTCATGTTCTCTTGAATTTCCTC
TCAGGTAACTGAAAAGCTAGCAAGGTGTGTATTAATCTTAAACTCTGGGAGTTTGTGCTT
TAAATCAGTCTTTGACATAACCTTACTTGTCTTCTCTTTGCCCCCTTTTTATGTAAGGTG
AGTAAAAAGAAGGAAATGAGAATATCAGCTTTATACAGATTCCAGTTAATCAGGATTTTA
CTTTCTCAGTCTGTGAAACTATTTTTCTTTGCTTGGCTATAATTAAAGTCTTTGGAAATA
GAATTGAAAGAAAGTATTTCCATCCTGTTACTATGTTTTCTAGAGGTTAAGTACAGTTAT
GCAAGAGAACATTATAGTTATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGGCCTCCTTACCTAAAAAGACCCTGCAGGCAGATAGAAGGATGGAAGTGAAACACA
GCTTCAGACCGGATGGACTTGGATCAAGCAGGAGTGTCCTAACAAACCGTTAGGAACAAC
CCAGTGGAAACTGATTTTTTTTTTTTTTTAATGGTAGTCACAGAAAACACCTGATACTCG
TATTTTCTTCTATAGAGTCAGAGACTTGAGAAAAAAAATCACTGACATTTAAATTATAAT
GTCTGTTGATAAAAACATGGCAGTCACAATATTAGATAATAGCATTTTCAGAATTCTTAG
TACAGAAGCAAAGCACTGGCTTTGTAAAAGGCCAAAATTTTATTTCCTACAAACTTAAGG
ATATGTAAGGCATGGAGAGATTAACATAAAAATAGCTTGTGGTATTGAGTTTTAATTTAT
ATATGTCCACAAAAGTACAGACTTGTACCAAACAAAACCTGGAAACTTGACAGCCCACAG
TTATGAGACCAGGTAGCCATAGTTCTTAGGACAGGGAGTCATGTTCTCTTGAATTTCCTC
TCAGGTAACTGAAAAGCTAGCAAGGTGTGTATTAATCTTAAACTCTGGGAGTTTGTGCTT
TAAATCAGTCTTTGACATAACCTTACTTGTCTTCTCTTTGCCCCCTTTTTATGTAAGGTG
AGTAAAAAGAAGGAAATGAGAATATCAGCTTTATACAGATTCCAGTTAATCAGGATTTTA
CTTTCTCAGTCTGTGAAACTATTTTTCTTTGCTTGGCTATAATTAAAGTCTTTGGAAATA
GAATTGAAAGAAAGTATTTCCATCCTGTTACTATGTTTTCTAGAGGTTAAGTACAGTTAT
GCAAGAGAACATTATAGTTATCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-196, - strand, RNAz p=0.726079

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-196, - strand, RNAz p=0.726079

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-645, gnl|bosTau2|chr23 (26821757-26821126)
               

               
               4-645, gnl|Hg17|chr6 (24531792-24532420)
               

               
               4-645, gnl|Mm7|chr13 (24358989-24358413)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-645, gnl|bosTau2|chr23 (26821757-26821126)
               

               
               4-645, gnl|Hg17|chr6 (24531792-24532420)
               

               
               4-645, gnl|Mm7|chr13 (24358989-24358413)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	4-645, gnl\|bosTau2\|chr23 (26821757-26821126)
	4-645, gnl\|Hg17\|chr6 (24531792-24532420)
	4-645, gnl\|Mm7\|chr13 (24358989-24358413)