Non-Coding RNA Search

Ss1.1-rton1209b_l24.5

Sequence:


               
               CACCCAGCCCCTAGCAGCACTTCGTCTGAGCTCTTCCGGACTCGGCCCCAACGGCGGCTC
CACCGGCCCTGCCTCCGAGGAGCGGGGCCCGTGGTCCTGGAGATTCCTTGTGGAGGGTCC
TGGCGGGGCCTCCCCAGGCGGAAAGGCAACAGCGGAAGGCGGGCCGGCCAGCACCCGGGG
TTCGGAAACTGCCGCTCCCGTCCACCCGACAAACCCGTCTCCCAGACAGGAGGAGAAGGC
AGGGCCGCCCAGTGCCCCCGGGCTGGCCTGCCCGCCTCGCCAGCTTCCCGGCCGGAGCTG
GCTGTGGGTGTCTGAGGGCACACGCAGCGAGGAGGAGGAGGAGGAGCCAGCCCCGGGCGT
CACCAAAGTGCCTGATGCCTCTGGCGACAGGGGGCAGGACGTTCCATGCAAAAGCTGCCC
CCTCGCCCAGGAGCCTGGGCCCAGCCTGCTCCAGAAAGGGCCGAGACCCGGGGGGCCCTC
AGAAGCATCAGGCCTTGGCGTCCGATGAGCTTTTAAAGCAGACGTAGCAGTTGTTTGCCG
TTTCCTCCGCTCAGACCTGTGTAATACATGCTCTTGAAAACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCAGCCCCTAGCAGCACTTCGTCTGAGCTCTTCCGGACTCGGCCCCAACGGCGGCTC
CACCGGCCCTGCCTCCGAGGAGCGGGGCCCGTGGTCCTGGAGATTCCTTGTGGAGGGTCC
TGGCGGGGCCTCCCCAGGCGGAAAGGCAACAGCGGAAGGCGGGCCGGCCAGCACCCGGGG
TTCGGAAACTGCCGCTCCCGTCCACCCGACAAACCCGTCTCCCAGACAGGAGGAGAAGGC
AGGGCCGCCCAGTGCCCCCGGGCTGGCCTGCCCGCCTCGCCAGCTTCCCGGCCGGAGCTG
GCTGTGGGTGTCTGAGGGCACACGCAGCGAGGAGGAGGAGGAGGAGCCAGCCCCGGGCGT
CACCAAAGTGCCTGATGCCTCTGGCGACAGGGGGCAGGACGTTCCATGCAAAAGCTGCCC
CCTCGCCCAGGAGCCTGGGCCCAGCCTGCTCCAGAAAGGGCCGAGACCCGGGGGGCCCTC
AGAAGCATCAGGCCTTGGCGTCCGATGAGCTTTTAAAGCAGACGTAGCAGTTGTTTGCCG
TTTCCTCCGCTCAGACCTGTGTAATACATGCTCTTGAAAACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-472, - strand, RNAz p=0.994636

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-472, - strand, RNAz p=0.994636

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-581, gnl|bosTau2|chr3 (70169355-70168775)
               

               
               1-581, gnl|Hg17|chr1 (46213230-46213812)
               

               
               1-581, gnl|Mm7|chr4 (115683779-115683203)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr3 (70169355-70168775)
               

               
               1-581, gnl|Hg17|chr1 (46213230-46213812)
               

               
               1-581, gnl|Mm7|chr4 (115683779-115683203)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.45861)
               

               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               mas (0.210305)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

	1-581, gnl\|bosTau2\|chr3 (70169355-70168775)
	1-581, gnl\|Hg17\|chr1 (46213230-46213812)
	1-581, gnl\|Mm7\|chr4 (115683779-115683203)

	ece (0.45861)
	mas (0.210305)
	ton (0.1755)
	hyp (0.142837)
	hlv (0.139256)
	ese (0.126502)
	nbm (0.0993246)