Non-Coding RNA Search

Ss1.1-rton1213b_d9.5

Sequence:


               
               GCAAAGTGCTGGATGGGGGGTGGGTGGCTGTGGTGCCCTCTGCTCCCTGGTGCTCTCCCT
GCTTCTCTTCCCATAGCCCTGCCCCAACCCTGGTCTGGTCCATTCCAAGACCCCAGGTCT
GTCCCAGAGTGAGTGGCAGGGCTGTTTCGACACCAAGGCGTCTTGGACTTGAGGGCCTCA
AAAGAATGTATCAGGTGGGCCACTGGTCCTTCTTGCCCACCTGAAGGCCCCGTACAGCCC
ACAGCTGCCCAGGACTCTATCCATGGAGAAGCAACAAACAGATGAAAACACACACACACA
CGCACATCCTGCCCCCAGGTTGGTGGAAGTGGGCCCAAGCCCAGCCCATCCGCCCCCACC
CCTCCAGGTCTGTCTGTCTTCCTGCTGTCTGCAGGAGAGAACCTGGCTGGCCCCTGGCCT
TGGACAGATCCCAAGAAAACCTGAGACTAAGTCCCTCCTTTGTGAACAAATTCTAGATCG
TTCTAGAGCTGGCTGACAACTTTCAGCAGTGCCCCACCTGCCTCATTTGGCCTGTGCAGC
AGAAGCATCTGACCTGGCGTCAGCAGTAATCATCTCCCCTCCAGGCGGACTCTATTGTCC
CATTCTACAGATAAGGAACCAGGTTTAGAGAGGAAAAGCCACTGCGTTGATGTCATACTA
CAGTGGCTGAAGTGTTGAGGGACAAGAGGCAAGGTCCAGGTTTCTGCTTTGCCTAAGTTG
TATGGGGCCACTCAGCTTCTAGGCCCCACTCACCTCTTTGCCCCCATTCATATGTGGCCC
GGACACAATATGAACACCCCCACCCGAGCACAGTGTACCTTATCCACCAAGCTTTGGTGC
TTTGGCCTCGGATACGCCTAACCAGCATTGGCAGAGAAGACCCTTCACTCCCTCTGCATT
TGGGGGAGGCTGCTTTGAGAAACCTGTCTCTGTGCAGCATGGGAGCTGCGGACAGCTCCA
CGAGTGTCCTTCTCCGAATAAAGGCTTACACTACTGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAGTGCTGGATGGGGGGTGGGTGGCTGTGGTGCCCTCTGCTCCCTGGTGCTCTCCCT
GCTTCTCTTCCCATAGCCCTGCCCCAACCCTGGTCTGGTCCATTCCAAGACCCCAGGTCT
GTCCCAGAGTGAGTGGCAGGGCTGTTTCGACACCAAGGCGTCTTGGACTTGAGGGCCTCA
AAAGAATGTATCAGGTGGGCCACTGGTCCTTCTTGCCCACCTGAAGGCCCCGTACAGCCC
ACAGCTGCCCAGGACTCTATCCATGGAGAAGCAACAAACAGATGAAAACACACACACACA
CGCACATCCTGCCCCCAGGTTGGTGGAAGTGGGCCCAAGCCCAGCCCATCCGCCCCCACC
CCTCCAGGTCTGTCTGTCTTCCTGCTGTCTGCAGGAGAGAACCTGGCTGGCCCCTGGCCT
TGGACAGATCCCAAGAAAACCTGAGACTAAGTCCCTCCTTTGTGAACAAATTCTAGATCG
TTCTAGAGCTGGCTGACAACTTTCAGCAGTGCCCCACCTGCCTCATTTGGCCTGTGCAGC
AGAAGCATCTGACCTGGCGTCAGCAGTAATCATCTCCCCTCCAGGCGGACTCTATTGTCC
CATTCTACAGATAAGGAACCAGGTTTAGAGAGGAAAAGCCACTGCGTTGATGTCATACTA
CAGTGGCTGAAGTGTTGAGGGACAAGAGGCAAGGTCCAGGTTTCTGCTTTGCCTAAGTTG
TATGGGGCCACTCAGCTTCTAGGCCCCACTCACCTCTTTGCCCCCATTCATATGTGGCCC
GGACACAATATGAACACCCCCACCCGAGCACAGTGTACCTTATCCACCAAGCTTTGGTGC
TTTGGCCTCGGATACGCCTAACCAGCATTGGCAGAGAAGACCCTTCACTCCCTCTGCATT
TGGGGGAGGCTGCTTTGAGAAACCTGTCTCTGTGCAGCATGGGAGCTGCGGACAGCTCCA
CGAGTGTCCTTCTCCGAATAAAGGCTTACACTACTGAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               61-254, - strand, RNAz p=0.849041
               

               
               324-432, - strand, RNAz p=0.832433
               

               
               870-988, - strand, RNAz p=0.999285

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-254, - strand, RNAz p=0.849041
               

               
               324-432, - strand, RNAz p=0.832433
               

               
               870-988, - strand, RNAz p=0.999285

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               40-242, - strand, RNAmicro p=0.997856

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               40-242, - strand, RNAmicro p=0.997856

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               22-717, gnl|bosTau2|chr29 (39744036-39743349)
               

               
               22-717, gnl|Hg17|chr11 (66948685-66949370)
               

               
               22-717, gnl|Mm7|chr19 (4060104-4059412)
               


               
               751-988, gnl|bosTau2|chr29 (39743168-39742935)
               

               
               751-988, gnl|Hg17|chr11 (66949417-66949642)
               

               
               751-988, gnl|Mm7|chr19 (4059379-4059142)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-717, gnl|bosTau2|chr29 (39744036-39743349)
               

               
               22-717, gnl|Hg17|chr11 (66948685-66949370)
               

               
               22-717, gnl|Mm7|chr19 (4060104-4059412)
               


               
               751-988, gnl|bosTau2|chr29 (39743168-39742935)
               

               
               751-988, gnl|Hg17|chr11 (66949417-66949642)
               

               
               751-988, gnl|Mm7|chr19 (4059379-4059142)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.351)
               

               
               cli (0.152812)
               

               
               ssp (0.13552)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               cli (0.152812)
               

               
               ssp (0.13552)

	61-254, - strand, RNAz p=0.849041
	324-432, - strand, RNAz p=0.832433
	870-988, - strand, RNAz p=0.999285

	22-717, gnl\|bosTau2\|chr29 (39744036-39743349)
	22-717, gnl\|Hg17\|chr11 (66948685-66949370)
	22-717, gnl\|Mm7\|chr19 (4060104-4059412)

	751-988, gnl\|bosTau2\|chr29 (39743168-39742935)
	751-988, gnl\|Hg17\|chr11 (66949417-66949642)
	751-988, gnl\|Mm7\|chr19 (4059379-4059142)