Non-Coding RNA Search

Ss1.1-rton1214b_c7.5

Sequence:


               
               TCAACTTGCCTCTGCCTGGACAACCTTCCTTGACCGGCCCCTCCAACTCCGAACATCCTC
CTCCCAAACCAGACCTGGGCCCTAATGATTTAGCAAAGGCTTCTCCGAAACCTGATGCTT
CTCCATCATTTGACTCTCTACTTGCAGGAGGTTCTGGGGTGCAGAGGTGGCCCCCATCCG
GGGGGCTGCCCTCTGAGGATTCCTGGTCCTCGGAGGACCCTTGGCCGATGATGGCTGCTG
CGGCTGAGGACCACGTGGGCGAAGTGCTGCCCGAGGAACTGTCTTACCTTTCTAGTGGGT
TCGCCCTCCCTCGGGGCGGGGGGCCTGTGCCTCCACACTCTGCAGACCCCTCGGCCGAGG
CTTCACTCCTCCACCAGGACTCCGAGTCTCGACGGCTACCCCGTTCTAACGTGCTGGGAG
CCCGGGGAGAAATCCTTGCCCGACACCCACTCTGGTCTCTCATCAACAGGATTCGACGGC
CATTTCTGCCTGGTTACCCCTGGGGGACCCTGAGTCCCAGTGTGTCCTGGGGAGGTGGAG
GTCCTGGAACTGGATGGGGCACAAGGCCCATGCCATACCCTGTGGGAAGCTGGGGTAACA
GCAATCAATACCCAAGTACTAGCTGGGGGACCATTAATCGATACCCAGGTATCAGCTGGG
GGAATATCCTTCGGTACCCAGGCATTAATCAATTTCCTCCCAGAGTTCTTCGTCCTCCTG
GCTCTTCTTGGAGCATCCCAGCTGGCTTTCCCAATCCTCAAAACCCTGGGTCACAGTGGA
GTTAGGAGATGGGGGCCCTAGGTTGGAAGTCAGGGAAGAAAGTCCCGTCCCCACCCCCTG
CAATGTGAGCTAAATCAAGATCCTACCAGCTGTTTTTGGCCTTATGCTCACTTTTCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAACTTGCCTCTGCCTGGACAACCTTCCTTGACCGGCCCCTCCAACTCCGAACATCCTC
CTCCCAAACCAGACCTGGGCCCTAATGATTTAGCAAAGGCTTCTCCGAAACCTGATGCTT
CTCCATCATTTGACTCTCTACTTGCAGGAGGTTCTGGGGTGCAGAGGTGGCCCCCATCCG
GGGGGCTGCCCTCTGAGGATTCCTGGTCCTCGGAGGACCCTTGGCCGATGATGGCTGCTG
CGGCTGAGGACCACGTGGGCGAAGTGCTGCCCGAGGAACTGTCTTACCTTTCTAGTGGGT
TCGCCCTCCCTCGGGGCGGGGGGCCTGTGCCTCCACACTCTGCAGACCCCTCGGCCGAGG
CTTCACTCCTCCACCAGGACTCCGAGTCTCGACGGCTACCCCGTTCTAACGTGCTGGGAG
CCCGGGGAGAAATCCTTGCCCGACACCCACTCTGGTCTCTCATCAACAGGATTCGACGGC
CATTTCTGCCTGGTTACCCCTGGGGGACCCTGAGTCCCAGTGTGTCCTGGGGAGGTGGAG
GTCCTGGAACTGGATGGGGCACAAGGCCCATGCCATACCCTGTGGGAAGCTGGGGTAACA
GCAATCAATACCCAAGTACTAGCTGGGGGACCATTAATCGATACCCAGGTATCAGCTGGG
GGAATATCCTTCGGTACCCAGGCATTAATCAATTTCCTCCCAGAGTTCTTCGTCCTCCTG
GCTCTTCTTGGAGCATCCCAGCTGGCTTTCCCAATCCTCAAAACCCTGGGTCACAGTGGA
GTTAGGAGATGGGGGCCCTAGGTTGGAAGTCAGGGAAGAAAGTCCCGTCCCCACCCCCTG
CAATGTGAGCTAAATCAAGATCCTACCAGCTGTTTTTGGCCTTATGCTCACTTTTCCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41529160|dbj|BAD08422.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41529160|dbj|BAD08422.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               120-239, - strand, RNAz p=0.767248
               

               
               348-467, - strand, RNAz p=0.81593
               

               
               548-652, + strand, RNAz p=0.981275

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.767248
               

               
               348-467, - strand, RNAz p=0.81593
               

               
               548-652, + strand, RNAz p=0.981275

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-652, gnl|bosTau2|chr23 (20525193-20525856)
               

               
               1-652, gnl|Hg17|chr6 (31187990-31187240)
               

               
               1-652, gnl|Mm7|chr17 (33670355-33670959)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-652, gnl|bosTau2|chr23 (20525193-20525856)
               

               
               1-652, gnl|Hg17|chr6 (31187990-31187240)
               

               
               1-652, gnl|Mm7|chr17 (33670355-33670959)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (4.212)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (4.212)

	120-239, - strand, RNAz p=0.767248
	348-467, - strand, RNAz p=0.81593
	548-652, + strand, RNAz p=0.981275

	1-652, gnl\|bosTau2\|chr23 (20525193-20525856)
	1-652, gnl\|Hg17\|chr6 (31187990-31187240)
	1-652, gnl\|Mm7\|chr17 (33670355-33670959)