Non-Coding RNA Search

Ss1.1-rton1214b_n2.5

Sequence:


               
               GGTGAAGGGCCTGTCTCCTCAACTACCGAGAGGCCTGATGTGTTAACACCTGGCAGGTGC
TCCGTGACCCACGGTCCCTGCTCTATAAGTGTTTGCTGCTGTTATGATGATTGCTTGATG
AATGGTTGCTGTGCGGTGTCGCCCGTGTCCTGTTTCTTCTGTGGCTTTGGGTCTGAATTT
GGGGGAGAGCTGAAGCCGGCTGACCACCTGGGGTATGCACCTCAGCCATCAGTTTCCCTG
AAAAGCAGGCGAGGTTGGGGACCTCAGTACCAGCCTGCTGAGGCTCAGAGGTCAAGCTGC
TGGACCAGACCCACACAGCGAGCAGAGACGAAAGCCCAGATGCCCTGAGCCCTGCTGGCA
TCCTCGACCCCAAGCTGGTGCCACCAGGGGCCCTGGGGTGTGGAGGGGCATATTTGAGCT
CACCCCCACCTCGTTTTCCTTAGCGGGGCAGATATTTAATGGTGACTTCGTGGACCGTGG
CTCCTTTTCCGTAGAAGTGATCCTCACCCTTTTTGGTTTTAAGCTCCTCTACCCAGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAAGGGCCTGTCTCCTCAACTACCGAGAGGCCTGATGTGTTAACACCTGGCAGGTGC
TCCGTGACCCACGGTCCCTGCTCTATAAGTGTTTGCTGCTGTTATGATGATTGCTTGATG
AATGGTTGCTGTGCGGTGTCGCCCGTGTCCTGTTTCTTCTGTGGCTTTGGGTCTGAATTT
GGGGGAGAGCTGAAGCCGGCTGACCACCTGGGGTATGCACCTCAGCCATCAGTTTCCCTG
AAAAGCAGGCGAGGTTGGGGACCTCAGTACCAGCCTGCTGAGGCTCAGAGGTCAAGCTGC
TGGACCAGACCCACACAGCGAGCAGAGACGAAAGCCCAGATGCCCTGAGCCCTGCTGGCA
TCCTCGACCCCAAGCTGGTGCCACCAGGGGCCCTGGGGTGTGGAGGGGCATATTTGAGCT
CACCCCCACCTCGTTTTCCTTAGCGGGGCAGATATTTAATGGTGACTTCGTGGACCGTGG
CTCCTTTTCCGTAGAAGTGATCCTCACCCTTTTTGGTTTTAAGCTCCTCTACCCAGATCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               176-428, + strand, RNAz p=0.98738

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-428, + strand, RNAz p=0.98738

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               205-286, + strand, RNAmicro p=0.949196

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               205-286, + strand, RNAmicro p=0.949196

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               11-540, gnl|bosTau2|chr18 (49852904-49852378)
               

               
               11-540, gnl|Hg17|chr19 (51579391-51579989)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-540, gnl|bosTau2|chr18 (49852904-49852378)
               

               
               11-540, gnl|Hg17|chr19 (51579391-51579989)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ton (0.1755)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	11-540, gnl\|bosTau2\|chr18 (49852904-49852378)
	11-540, gnl\|Hg17\|chr19 (51579391-51579989)