Non-Coding RNA Search

Ss1.1-rton1221b_b21.5

Sequence:


               
               TGACCATCAACCAGAATCTGCTGACCCCACTGAAGATCGAGATGGACCCCCAGTTCCAGG
TGGTTCGGACTCAGGAGACCCAGCAGATCAGAACCCTCAACAACCAGTTTGCATCTTTCA
TTGACAAGGTTCGGTTCCTGGAGCAGCAGAACCAAGTCCTGGAGACCAAGTGGCATTTGC
TGCAGCAGCAGGGGGTGAGGGACAGCCCCCAGGGCCTAGAGTCTTTCTTCGAGGTGTACG
TGGCCCACCTCAGGAAACAGCTGGAGCAGCTGCAGAGAGAACGAGGAGCTCTGGACGCTG
AGCTGAAGTCCTGCCAGGACCAGGAGGAAGAATATAAGGCCAAGTATGAGCGGGAAGCCC
TCAGACACGCCACCCTGGAGAATGACTTTGTGGTCCTCAAAAAGGATGTGGATGGGGTTT
TCCTGAGCAAGATGGAGTTGGAAGGCAAGCTGAAAGCTCTGAAAGAGTACATCTGCTTCT
TGAGGCGTCTCTATGAAGAAGAGCTGGGCCAGCTGCAGACCCAGGCTGGCGACCTGTCCG
TGGTGCTGTCCATGGACAATAACCGCCGCCTGGACTTCAGAGACATCATCGCTGAGGTCC
GCGCCCGATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCATCAACCAGAATCTGCTGACCCCACTGAAGATCGAGATGGACCCCCAGTTCCAGG
TGGTTCGGACTCAGGAGACCCAGCAGATCAGAACCCTCAACAACCAGTTTGCATCTTTCA
TTGACAAGGTTCGGTTCCTGGAGCAGCAGAACCAAGTCCTGGAGACCAAGTGGCATTTGC
TGCAGCAGCAGGGGGTGAGGGACAGCCCCCAGGGCCTAGAGTCTTTCTTCGAGGTGTACG
TGGCCCACCTCAGGAAACAGCTGGAGCAGCTGCAGAGAGAACGAGGAGCTCTGGACGCTG
AGCTGAAGTCCTGCCAGGACCAGGAGGAAGAATATAAGGCCAAGTATGAGCGGGAAGCCC
TCAGACACGCCACCCTGGAGAATGACTTTGTGGTCCTCAAAAAGGATGTGGATGGGGTTT
TCCTGAGCAAGATGGAGTTGGAAGGCAAGCTGAAAGCTCTGAAAGAGTACATCTGCTTCT
TGAGGCGTCTCTATGAAGAAGAGCTGGGCCAGCTGCAGACCCAGGCTGGCGACCTGTCCG
TGGTGCTGTCCATGGACAATAACCGCCGCCTGGACTTCAGAGACATCATCGCTGAGGTCC
GCGCCCGATATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               230-348, - strand, RNAz p=0.92019

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-348, - strand, RNAz p=0.92019

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               127-348, gnl|bosTau2|chr5 (20336160-20335939)
               

               
               127-348, gnl|canFam2|chr27 (5262503-5262268)
               

               
               127-348, gnl|danRer3|chr3 (28777622-28777424)
               

               
               127-348, gnl|dasNov1|scaffold_36707 (5701-5482)
               

               
               127-348, gnl|echTel1|scaffold_303354 (8432-8682)
               

               
               127-348, gnl|fr1|chrUn (207854897-207854669)
               

               
               127-348, gnl|galGal2|chrUn (7746449-7746224)
               

               
               127-348, gnl|hg17|chr12 (51527939-51528175)
               

               
               127-348, gnl|Hg17|chr12 (51528174-51527953)
               

               
               127-348, gnl|loxAfr1|scaffold_3302 (61082-61328)
               

               
               127-348, gnl|mm7|chr15 (101939372-101939603)
               

               
               127-348, gnl|Mm7|chr15 (101939602-101939381)
               

               
               127-348, gnl|monDom2|scaffold_3 (53701418-53701212)
               

               
               127-348, gnl|oryCun1|scaffold_72457 (1470-1239)
               

               
               127-348, gnl|panTro1|chr10 (52753656-52753892)
               

               
               127-348, gnl|rheMac2|chr11 (49915738-49915974)
               

               
               127-348, gnl|rn3|chr7 (140730895-140731126)
               

               
               127-348, gnl|tetNig1|chrUn_random (12016765-12016552)
               

               
               127-348, gnl|xenTro1|scaffold_1262 (223860-224076)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-348, gnl|bosTau2|chr5 (20336160-20335939)
               

               
               127-348, gnl|canFam2|chr27 (5262503-5262268)
               

               
               127-348, gnl|danRer3|chr3 (28777622-28777424)
               

               
               127-348, gnl|dasNov1|scaffold_36707 (5701-5482)
               

               
               127-348, gnl|echTel1|scaffold_303354 (8432-8682)
               

               
               127-348, gnl|fr1|chrUn (207854897-207854669)
               

               
               127-348, gnl|galGal2|chrUn (7746449-7746224)
               

               
               127-348, gnl|hg17|chr12 (51527939-51528175)
               

               
               127-348, gnl|Hg17|chr12 (51528174-51527953)
               

               
               127-348, gnl|loxAfr1|scaffold_3302 (61082-61328)
               

               
               127-348, gnl|mm7|chr15 (101939372-101939603)
               

               
               127-348, gnl|Mm7|chr15 (101939602-101939381)
               

               
               127-348, gnl|monDom2|scaffold_3 (53701418-53701212)
               

               
               127-348, gnl|oryCun1|scaffold_72457 (1470-1239)
               

               
               127-348, gnl|panTro1|chr10 (52753656-52753892)
               

               
               127-348, gnl|rheMac2|chr11 (49915738-49915974)
               

               
               127-348, gnl|rn3|chr7 (140730895-140731126)
               

               
               127-348, gnl|tetNig1|chrUn_random (12016765-12016552)
               

               
               127-348, gnl|xenTro1|scaffold_1262 (223860-224076)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ton (0.351)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)

	127-348, gnl\|bosTau2\|chr5 (20336160-20335939)
	127-348, gnl\|canFam2\|chr27 (5262503-5262268)
	127-348, gnl\|danRer3\|chr3 (28777622-28777424)
	127-348, gnl\|dasNov1\|scaffold_36707 (5701-5482)
	127-348, gnl\|echTel1\|scaffold_303354 (8432-8682)
	127-348, gnl\|fr1\|chrUn (207854897-207854669)
	127-348, gnl\|galGal2\|chrUn (7746449-7746224)
	127-348, gnl\|hg17\|chr12 (51527939-51528175)
	127-348, gnl\|Hg17\|chr12 (51528174-51527953)
	127-348, gnl\|loxAfr1\|scaffold_3302 (61082-61328)
	127-348, gnl\|mm7\|chr15 (101939372-101939603)
	127-348, gnl\|Mm7\|chr15 (101939602-101939381)
	127-348, gnl\|monDom2\|scaffold_3 (53701418-53701212)
	127-348, gnl\|oryCun1\|scaffold_72457 (1470-1239)
	127-348, gnl\|panTro1\|chr10 (52753656-52753892)
	127-348, gnl\|rheMac2\|chr11 (49915738-49915974)
	127-348, gnl\|rn3\|chr7 (140730895-140731126)
	127-348, gnl\|tetNig1\|chrUn_random (12016765-12016552)
	127-348, gnl\|xenTro1\|scaffold_1262 (223860-224076)