Non-Coding RNA Search

Ss1.1-rton1221b_j5.5

Sequence:


               
               CCAGTTAACATCTCCGTGGTCACCTCCACCATCTCCAGTGGCTACGGAGCTGGCAGCGGC
ATTGGTGGCAGCAGCCTCGGCGTCAGTGGGGGCAGCGGCTACTCCTTCACCACTAGTGGT
GGGCACAGTCTGGGAACGAGCCTGGGGGGCTCTGGCTTCAGCGCCAGTAGCAGCCGGGGC
CTCAGGGGCAGTGGCTCCAGCGTCAAGTTTGTCTCCACCACGTCCTCCAGCCGGAAGAGC
TATAAGCACTAAGGGCAGCCGCCCCTCACCTTCAGCACTGCCCTGAAGCCAGATCCTCCA
ACTCACCTGGCCTGTCTGCACTTGCTCCTGCTCACCTGGGGGCTTCTCCTACATCTCCCT
TCTGAGAGGCCCACCTGTGCTGCTGGGAAGCCTGGCATTCCAGCTAAACCCCGATCCCCA
GCCCAAGCCAGCCTCTGCCCTCCCAACAGTCCCCAGATGGCTCCTGGTACCGCTCAGTGC
CAAAGCCTTCTCTCTTTCAAAATTCACAGTAGGCTTGTCTTTTGGAGATTCCCCATCAGC
TCCGCCCCTCTCCCTCCCTTCCGATGCAGTGATGAGCAGTCTGTGTCTCCTGTGCCATCT
CGATGTCAACCCACCTGGCTCACAGTGCTTATGAGCTGCGTGGGAGTACAGTCTTCCTCT
CTTTCCTCCCTGGACTGTGTCTATTAAATGCATGTGTAATGTGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTTAACATCTCCGTGGTCACCTCCACCATCTCCAGTGGCTACGGAGCTGGCAGCGGC
ATTGGTGGCAGCAGCCTCGGCGTCAGTGGGGGCAGCGGCTACTCCTTCACCACTAGTGGT
GGGCACAGTCTGGGAACGAGCCTGGGGGGCTCTGGCTTCAGCGCCAGTAGCAGCCGGGGC
CTCAGGGGCAGTGGCTCCAGCGTCAAGTTTGTCTCCACCACGTCCTCCAGCCGGAAGAGC
TATAAGCACTAAGGGCAGCCGCCCCTCACCTTCAGCACTGCCCTGAAGCCAGATCCTCCA
ACTCACCTGGCCTGTCTGCACTTGCTCCTGCTCACCTGGGGGCTTCTCCTACATCTCCCT
TCTGAGAGGCCCACCTGTGCTGCTGGGAAGCCTGGCATTCCAGCTAAACCCCGATCCCCA
GCCCAAGCCAGCCTCTGCCCTCCCAACAGTCCCCAGATGGCTCCTGGTACCGCTCAGTGC
CAAAGCCTTCTCTCTTTCAAAATTCACAGTAGGCTTGTCTTTTGGAGATTCCCCATCAGC
TCCGCCCCTCTCCCTCCCTTCCGATGCAGTGATGAGCAGTCTGTGTCTCCTGTGCCATCT
CGATGTCAACCCACCTGGCTCACAGTGCTTATGAGCTGCGTGGGAGTACAGTCTTCCTCT
CTTTCCTCCCTGGACTGTGTCTATTAAATGCATGTGTAATGTGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               371-479, - strand, RNAz p=0.987571

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-479, - strand, RNAz p=0.987571

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               16-703, gnl|bosTau2|chr5 (19894001-19893328)
               

               
               16-703, gnl|canFam2|chr27 (5649336-5648652)
               

               
               16-703, gnl|dasNov1|scaffold_14430 (39867-40551)
               

               
               16-703, gnl|echTel1|scaffold_284717 (8-612)
               

               
               16-703, gnl|hg17|chr12 (51104070-51104728)
               

               
               16-703, gnl|Hg17|chr12 (51104804-51104121)
               

               
               16-703, gnl|loxAfr1|scaffold_16127 (11420-12044)
               

               
               16-703, gnl|mm7|chr15 (101550511-101551196)
               

               
               16-703, gnl|Mm7|chr15 (101551272-101550560)
               

               
               16-703, gnl|monDom2|scaffold_264 (447693-448546)
               

               
               16-703, gnl|oryCun1|scaffold_205889 (44529-45079)
               

               
               16-703, gnl|panTro1|chr10 (52326792-52327450)
               

               
               16-703, gnl|rheMac2|chr11 (49525380-49526041)
               

               
               16-703, gnl|rn3|chr7 (140396609-140397279)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-703, gnl|bosTau2|chr5 (19894001-19893328)
               

               
               16-703, gnl|canFam2|chr27 (5649336-5648652)
               

               
               16-703, gnl|dasNov1|scaffold_14430 (39867-40551)
               

               
               16-703, gnl|echTel1|scaffold_284717 (8-612)
               

               
               16-703, gnl|hg17|chr12 (51104070-51104728)
               

               
               16-703, gnl|Hg17|chr12 (51104804-51104121)
               

               
               16-703, gnl|loxAfr1|scaffold_16127 (11420-12044)
               

               
               16-703, gnl|mm7|chr15 (101550511-101551196)
               

               
               16-703, gnl|Mm7|chr15 (101551272-101550560)
               

               
               16-703, gnl|monDom2|scaffold_264 (447693-448546)
               

               
               16-703, gnl|oryCun1|scaffold_205889 (44529-45079)
               

               
               16-703, gnl|panTro1|chr10 (52326792-52327450)
               

               
               16-703, gnl|rheMac2|chr11 (49525380-49526041)
               

               
               16-703, gnl|rn3|chr7 (140396609-140397279)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               ton (0.1755)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ton (0.1755)

	16-703, gnl\|bosTau2\|chr5 (19894001-19893328)
	16-703, gnl\|canFam2\|chr27 (5649336-5648652)
	16-703, gnl\|dasNov1\|scaffold_14430 (39867-40551)
	16-703, gnl\|echTel1\|scaffold_284717 (8-612)
	16-703, gnl\|hg17\|chr12 (51104070-51104728)
	16-703, gnl\|Hg17\|chr12 (51104804-51104121)
	16-703, gnl\|loxAfr1\|scaffold_16127 (11420-12044)
	16-703, gnl\|mm7\|chr15 (101550511-101551196)
	16-703, gnl\|Mm7\|chr15 (101551272-101550560)
	16-703, gnl\|monDom2\|scaffold_264 (447693-448546)
	16-703, gnl\|oryCun1\|scaffold_205889 (44529-45079)
	16-703, gnl\|panTro1\|chr10 (52326792-52327450)
	16-703, gnl\|rheMac2\|chr11 (49525380-49526041)
	16-703, gnl\|rn3\|chr7 (140396609-140397279)