Non-Coding RNA Search

Ss1.1-rton1222b_d18.5

Sequence:


               
               CCCGAGGCCGCTCTTCCCTACTCTTCCTGCCAAGAAGCCAAGGGCTGCTCTGCCTGGCCG
GTGTCCTGCGGTCTGACTTCTCCCCGATTCCCAGTTTCCTTCCTTTGGGTTACTGCTCGC
CACCCAGTCCCACAGCCTCAAGAAAAGCAGATTCAATACAATTTCAAAAATCAGAGCGTT
GGGGGAGAAAGGAACACTGCATCGCCGAAATGAACGCGTCTGGCACCACCGCATCCCAGC
TTTGGATGAACATGGAGAGTGGAGGGTGGACTTTCCACACAGCCGATGTCTTCGGCCCAT
TGTCCTCTGCCTCCCTCCCGTTCCTTTCTTTCCCTGGCAGGAGAAGGTTCTTTCCCTCTC
TTCCTGACCCAGAAGGATCCCCCGTCTTTGCTGGCCCCAGGGATCCCTGCATCCCCAGAG
ATGGGTCTTCTCCGAGTGGCACATGTGCTGGCTGCCTCTCTTCCTGGGTTGGTGGTTTAA
CCCTGGCCTGTGAGTCCATGCGGTGGGTGGGTGCTGATGGAGAGGTGGGCCCTACCACAC
CCCCACACCCCTGCTGGAGGTGTGAGGGAGGCCCAGCCCTTTCCCCTGCAGGAGGGTTTG
TGTCTGTAAGCTCCAGGGAGGCCTGGGCTGGGGCGGGTCCCTCTTCGTACTGCTCTTTGT
GTTGATGGGATTTCAATAAACTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGAGGCCGCTCTTCCCTACTCTTCCTGCCAAGAAGCCAAGGGCTGCTCTGCCTGGCCG
GTGTCCTGCGGTCTGACTTCTCCCCGATTCCCAGTTTCCTTCCTTTGGGTTACTGCTCGC
CACCCAGTCCCACAGCCTCAAGAAAAGCAGATTCAATACAATTTCAAAAATCAGAGCGTT
GGGGGAGAAAGGAACACTGCATCGCCGAAATGAACGCGTCTGGCACCACCGCATCCCAGC
TTTGGATGAACATGGAGAGTGGAGGGTGGACTTTCCACACAGCCGATGTCTTCGGCCCAT
TGTCCTCTGCCTCCCTCCCGTTCCTTTCTTTCCCTGGCAGGAGAAGGTTCTTTCCCTCTC
TTCCTGACCCAGAAGGATCCCCCGTCTTTGCTGGCCCCAGGGATCCCTGCATCCCCAGAG
ATGGGTCTTCTCCGAGTGGCACATGTGCTGGCTGCCTCTCTTCCTGGGTTGGTGGTTTAA
CCCTGGCCTGTGAGTCCATGCGGTGGGTGGGTGCTGATGGAGAGGTGGGCCCTACCACAC
CCCCACACCCCTGCTGGAGGTGTGAGGGAGGCCCAGCCCTTTCCCCTGCAGGAGGGTTTG
TGTCTGTAAGCTCCAGGGAGGCCTGGGCTGGGGCGGGTCCCTCTTCGTACTGCTCTTTGT
GTTGATGGGATTTCAATAAACTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               306-425, - strand, RNAz p=0.935997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-425, - strand, RNAz p=0.935997

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               70-684, gnl|bosTau2|chr5 (19847135-19846543)
               

               
               70-684, gnl|Hg17|chr12 (51057871-51057309)
               

               
               70-684, gnl|Mm7|chr15 (101511730-101511197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-684, gnl|bosTau2|chr5 (19847135-19846543)
               

               
               70-684, gnl|Hg17|chr12 (51057871-51057309)
               

               
               70-684, gnl|Mm7|chr15 (101511730-101511197)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (1.5795)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (1.5795)

	70-684, gnl\|bosTau2\|chr5 (19847135-19846543)
	70-684, gnl\|Hg17\|chr12 (51057871-51057309)
	70-684, gnl\|Mm7\|chr15 (101511730-101511197)