Non-Coding RNA Search

Ss1.1-rton1222b_o1.5

Sequence:


               
               CCTCAGCTCCCTCAGACCACTGCTCCAACCCCCTGTCATCCTGTCCACGGCAAAGCCGAG
AGAGTTGCCTGCAGAAGAGCAACTGGCCTGCTTCCTCCTCCACGGGTCTTTTTGGAAAAT
CTGCATTGACAGTTCGTTGGTGGGTGGAAATAAGAAGTTCTCATCATCTCCTGCATTCAT
GGGTGAGGAGCAGTGGAGCCTCAAAAAACCTCTCTGCTCATCTCTCCTCCTCCGAACAGA
AACTACTTCTCTAAATTGTGTGATGTATCACTTTAGATTATTGATAATAATCTCCAATAT
TCACTGTGCTCTTATCATATGCCAGGTACCACACTAAGTGCTTCATATGAATTTAATTTA
ACCGTCACAATGAGCCTATGAGGTAGGCAATAGTATTATTCACATTTTATGCTTGTGAAA
ATGAACATTCAATCAAGCTAGTAAGCGGTAGAGAGAAAATTAAAATCCAGATAATCAGGG
TCTAAGACCAAGTCATTTATTCAATCATTTGTCCATTCATTTTTGACTTTGAGAATGAAA
AGTTGAGTTCATCACACTCCCTAGTTTATTGCTATCACAAGTGTGGGCAAGACCCCTCTC
CTGCATACTTATTGATTGGATGGTTAATTCATGAACTTTTATAACAATTTCTATCTTCCC
TTCTCCTGCCAAAGGCACACATTCTAACGTTTGATATATATATGCCTTACTTATATATGT
TTTGAAGATGTGCATTGTTTTTCTCTGCATATATATTTAATAAATGTAAATGGCATTATA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCAGCTCCCTCAGACCACTGCTCCAACCCCCTGTCATCCTGTCCACGGCAAAGCCGAG
AGAGTTGCCTGCAGAAGAGCAACTGGCCTGCTTCCTCCTCCACGGGTCTTTTTGGAAAAT
CTGCATTGACAGTTCGTTGGTGGGTGGAAATAAGAAGTTCTCATCATCTCCTGCATTCAT
GGGTGAGGAGCAGTGGAGCCTCAAAAAACCTCTCTGCTCATCTCTCCTCCTCCGAACAGA
AACTACTTCTCTAAATTGTGTGATGTATCACTTTAGATTATTGATAATAATCTCCAATAT
TCACTGTGCTCTTATCATATGCCAGGTACCACACTAAGTGCTTCATATGAATTTAATTTA
ACCGTCACAATGAGCCTATGAGGTAGGCAATAGTATTATTCACATTTTATGCTTGTGAAA
ATGAACATTCAATCAAGCTAGTAAGCGGTAGAGAGAAAATTAAAATCCAGATAATCAGGG
TCTAAGACCAAGTCATTTATTCAATCATTTGTCCATTCATTTTTGACTTTGAGAATGAAA
AGTTGAGTTCATCACACTCCCTAGTTTATTGCTATCACAAGTGTGGGCAAGACCCCTCTC
CTGCATACTTATTGATTGGATGGTTAATTCATGAACTTTTATAACAATTTCTATCTTCCC
TTCTCCTGCCAAAGGCACACATTCTAACGTTTGATATATATATGCCTTACTTATATATGT
TTTGAAGATGTGCATTGTTTTTCTCTGCATATATATTTAATAAATGTAAATGGCATTATA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               664-780, + strand, RNAz p=0.941605

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               664-780, + strand, RNAz p=0.941605

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               136-421, gnl|bosTau2|chr23 (4345730-4346002)
               

               
               136-421, gnl|Hg17|chr6 (54239870-54240166)
               

               
               136-421, gnl|Mm7|chr9 (77137974-77137707)
               


               
               428-780, gnl|bosTau2|chr23 (4346042-4346386)
               

               
               428-780, gnl|Hg17|chr6 (54240184-54240548)
               

               
               428-780, gnl|Mm7|chr9 (77137689-77137385)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-421, gnl|bosTau2|chr23 (4345730-4346002)
               

               
               136-421, gnl|Hg17|chr6 (54239870-54240166)
               

               
               136-421, gnl|Mm7|chr9 (77137974-77137707)
               


               
               428-780, gnl|bosTau2|chr23 (4346042-4346386)
               

               
               428-780, gnl|Hg17|chr6 (54240184-54240548)
               

               
               428-780, gnl|Mm7|chr9 (77137689-77137385)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ton (0.1755)
               

               
               isp (0.150376)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               isp (0.150376)

	136-421, gnl\|bosTau2\|chr23 (4345730-4346002)
	136-421, gnl\|Hg17\|chr6 (54239870-54240166)
	136-421, gnl\|Mm7\|chr9 (77137974-77137707)

	428-780, gnl\|bosTau2\|chr23 (4346042-4346386)
	428-780, gnl\|Hg17\|chr6 (54240184-54240548)
	428-780, gnl\|Mm7\|chr9 (77137689-77137385)