Non-Coding RNA Search

Ss1.1-rton1224b_o2.5

Sequence:


               
               CCTCTAAAAGAGAATGATGCAGCCGGTTACAAAATATTGCTATTCTGGACATTCTGTGCG
TTGAATGACACTGCAGTGTGGGGAGAAAGCCTCTCATGGTGCAGATCCTTGGCACAACTC
TTGCCACCCAAATGCCCTCAATGAGATGCTAAGGCCTTACTCTCACAAGAAGACAGCTAA
GTGGAGACAGCGAGTTGGGCAGTTTCCTGGGCTTGTGCCATGAACAAAATTCAAAGTCCT
GTATATCTTTCATCATCGATTTTTAAATACTCCTTTTCTTGAGAAACTCAAAATAAGGGT
TTAGATTACTGCTGTTTTACATTTTAAACTTAATATTGAGCAGCTACCTACAATTTTTAC
TTATGTTTTATTTTTCCCCCTAAATTGTGTTCCTTTTGACATTTTCCTTATATATGCTAT
TTGTGACAAATCATCAGCCAGATTTCCTGGCTGACACATAGGTAGTAAGTACAGGATAAT
CTTGTAGCATTCACAGCTGCAAAGTAGCATTCTGTTTTTAATGACAGTTTGGGTAGTAAA
TTTTGATAGAGGCCAAAAAGGGAGGGCGATATTCTCTCTCCTCTCGTCAGTTTAGACATT
TGGCTCTTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTAAAAGAGAATGATGCAGCCGGTTACAAAATATTGCTATTCTGGACATTCTGTGCG
TTGAATGACACTGCAGTGTGGGGAGAAAGCCTCTCATGGTGCAGATCCTTGGCACAACTC
TTGCCACCCAAATGCCCTCAATGAGATGCTAAGGCCTTACTCTCACAAGAAGACAGCTAA
GTGGAGACAGCGAGTTGGGCAGTTTCCTGGGCTTGTGCCATGAACAAAATTCAAAGTCCT
GTATATCTTTCATCATCGATTTTTAAATACTCCTTTTCTTGAGAAACTCAAAATAAGGGT
TTAGATTACTGCTGTTTTACATTTTAAACTTAATATTGAGCAGCTACCTACAATTTTTAC
TTATGTTTTATTTTTCCCCCTAAATTGTGTTCCTTTTGACATTTTCCTTATATATGCTAT
TTGTGACAAATCATCAGCCAGATTTCCTGGCTGACACATAGGTAGTAAGTACAGGATAAT
CTTGTAGCATTCACAGCTGCAAAGTAGCATTCTGTTTTTAATGACAGTTTGGGTAGTAAA
TTTTGATAGAGGCCAAAAAGGGAGGGCGATATTCTCTCTCCTCTCGTCAGTTTAGACATT
TGGCTCTTACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               404-518, + strand, RNAz p=0.729677

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-518, + strand, RNAz p=0.729677

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC053871, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC053871, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-609, gnl|bosTau2|chr21 (4705603-4706215)
               

               
               5-609, gnl|Hg17|chr15 (98072145-98072777)
               

               
               5-609, gnl|Mm7|chr7 (63094631-63094005)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-609, gnl|bosTau2|chr21 (4705603-4706215)
               

               
               5-609, gnl|Hg17|chr15 (98072145-98072777)
               

               
               5-609, gnl|Mm7|chr7 (63094631-63094005)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tbr (0.308356)
               

               
               ton (0.1755)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               ton (0.1755)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)

	5-609, gnl\|bosTau2\|chr21 (4705603-4706215)
	5-609, gnl\|Hg17\|chr15 (98072145-98072777)
	5-609, gnl\|Mm7\|chr7 (63094631-63094005)