Ss1.1-rton1228b_k22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGCTTCAGTGCCAGCTCAGCCAGAGTCCCCGGGGTCTGCCGCTCTGGCTTCAGCACT GTCTCCGTGTCCCGCTCCAGGGGCAGTGGCGGCCTGTCTGGAGTGTGTGGAGGAGCTGGT TTTGGCAGCCGCAGCCTCTATAGCCTGGGGGGCTCCAAGAGGATCTCCATCGGAGGGGGC AGTTGTGTCATTGGTGGTGGATATGGCGGCGGAGTTGGGGCTGGCTTCGGCTTTGGAGGT GGAGCCAGGAGTGGATTTGGTTTTGGTGCTGGTAGTGGTGGCTTTGGGCTCGGTGGTGGA GCTGGCTTTGTTGGGGGCTATGGGGGCTCTGGCTTCCCTGTGTGCCCCCCCGGAGGCATC CAAGAGGTCACCATCAACCAGAATCTCCTCACCCCTCTGAACCTGCAAATCGACCCCACC ATCCAGCGGGTGAGGACCGAGGAGCGGGAGCAGATCAAGACCCTCAACAACAAGTTCGCC TCCTTCATCGACAAGGTCCGATTCCTGGAGCAGCAGAACAAGGTCCTGGACACCAAGTGG ACCCTGCTGCAGGAGCAGGGCACCAAGACTGTCAGGCAGAACCTGGAGCCTTTGTTCGAG CAGTACATCAACAACCTTAGGAGACAGCTGGACAGCATCCTGGGGGAGAGAGGCCGCCTG GACTCAGAGCTGAGGAGCATGCAGGACCTGGTGGAGGACTTCAAGAACAAGTATGAAGAC GAGATCAACAAGCGCACAGCGGCCGAGAATGAATTTGTGAATCTGAAGAAGGATGTGGAT ACTGCCTACATGAATAAGGTTGAACTACAAGCCAAGGTCGACTCTCTCACAGATGAGATC AACTTCCTAAGAGCCTTCTATGACGCAGAACTGGCTCAGATGCAAACCCACATCTCAGAC ACGTCTGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGACAGCATCATCGCT GAAGTCAAAGCCCAATATGAGGACATTGCTCAGAGGAGCCGGGCTGAGGCTGAGTCCTGG TACCAGTCCAAGTATGAGGAGCTGCGGGTCACAGCGGGCAGGCACGGAGATGACCTGCGC AACACCAAGCAGGAGATCTCCGAGATCAACCGCATGATCCAGAGGCTGCGGTCTGAGATC GACCACGTCAAGAAGCAGTGCGCCAGCCTGCAGTCTGCCATCGCTGATGCCGAGCAGCGT GGGGAGATGGCCCTCAAGGATGCCAGGAACAAGCTGGCCGAGCTGGAGGATGCCCTGCTT AAGGCCAAGCAGGACATGGCCAGGCTGCTGAAGGAGTACCAGGAGCTCATGAACGCCAAG CTGGCCCTGGACGTGGAGATTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGTGCAGG CTGAATGGGGAAGGCGTTGGACAAGTCAACATCTCTGTGGTGCAGTCCACCGTCTCCAGC GGCTATGGCGGTGCCAGCGGTGTCGGCAGTGGCTTGGGCCTGGGTGGAGGCAGTGGCTAC TCCTACAGCAGTGGTCACGGCCTTGGAGGTGGCTTCAGTTCTGGCAGTGGCAGAGCCATA GGAGGTGGCCTCAGCTCCTCTGGGGGCAGCAGTTCCACCATCAAATACACCACCACCACC TCCTCCTCTTCTAGCAGGAAGGGCTACAGGCACTGAAGTCCTGCCATGTGCTCTTGGTCC CACGATGTCTAGGTCTCTCTCATCTGAACTGCCATCTCCTCCATTTTCTTCCTCTCTCTT GCTCCCAACTTCCCTGACTTCTTGAGTTAGAACTGAAGTTCCTGAGTGCCTGCATCTCCC CTTGCTCAATCTGAGCTTTCATTGATCAACACTGGAAGGTCATTGCCTGGGTTCTGATCC AGATCCGAGCAATTCCCCTTGCTCTCCAGTTGTCCAGGATTTCCCATCTTACAGGTTTCA ATGTTAAAGCATGAGTGACAAGTTCTATGCTATACAAGGTGTGGATCCCTGTGATGCTTC CTCTGTTCTTTGCTCACTTGTAATTGCTAAATAAAGCAGATTTATAATACAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGCTTCAGTGCCAGCTCAGCCAGAGTCCCCGGGGTCTGCCGCTCTGGCTTCAGCACT GTCTCCGTGTCCCGCTCCAGGGGCAGTGGCGGCCTGTCTGGAGTGTGTGGAGGAGCTGGT TTTGGCAGCCGCAGCCTCTATAGCCTGGGGGGCTCCAAGAGGATCTCCATCGGAGGGGGC AGTTGTGTCATTGGTGGTGGATATGGCGGCGGAGTTGGGGCTGGCTTCGGCTTTGGAGGT GGAGCCAGGAGTGGATTTGGTTTTGGTGCTGGTAGTGGTGGCTTTGGGCTCGGTGGTGGA GCTGGCTTTGTTGGGGGCTATGGGGGCTCTGGCTTCCCTGTGTGCCCCCCCGGAGGCATC CAAGAGGTCACCATCAACCAGAATCTCCTCACCCCTCTGAACCTGCAAATCGACCCCACC ATCCAGCGGGTGAGGACCGAGGAGCGGGAGCAGATCAAGACCCTCAACAACAAGTTCGCC TCCTTCATCGACAAGGTCCGATTCCTGGAGCAGCAGAACAAGGTCCTGGACACCAAGTGG ACCCTGCTGCAGGAGCAGGGCACCAAGACTGTCAGGCAGAACCTGGAGCCTTTGTTCGAG CAGTACATCAACAACCTTAGGAGACAGCTGGACAGCATCCTGGGGGAGAGAGGCCGCCTG GACTCAGAGCTGAGGAGCATGCAGGACCTGGTGGAGGACTTCAAGAACAAGTATGAAGAC GAGATCAACAAGCGCACAGCGGCCGAGAATGAATTTGTGAATCTGAAGAAGGATGTGGAT ACTGCCTACATGAATAAGGTTGAACTACAAGCCAAGGTCGACTCTCTCACAGATGAGATC AACTTCCTAAGAGCCTTCTATGACGCAGAACTGGCTCAGATGCAAACCCACATCTCAGAC ACGTCTGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGACAGCATCATCGCT GAAGTCAAAGCCCAATATGAGGACATTGCTCAGAGGAGCCGGGCTGAGGCTGAGTCCTGG TACCAGTCCAAGTATGAGGAGCTGCGGGTCACAGCGGGCAGGCACGGAGATGACCTGCGC AACACCAAGCAGGAGATCTCCGAGATCAACCGCATGATCCAGAGGCTGCGGTCTGAGATC GACCACGTCAAGAAGCAGTGCGCCAGCCTGCAGTCTGCCATCGCTGATGCCGAGCAGCGT GGGGAGATGGCCCTCAAGGATGCCAGGAACAAGCTGGCCGAGCTGGAGGATGCCCTGCTT AAGGCCAAGCAGGACATGGCCAGGCTGCTGAAGGAGTACCAGGAGCTCATGAACGCCAAG CTGGCCCTGGACGTGGAGATTGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGTGCAGG CTGAATGGGGAAGGCGTTGGACAAGTCAACATCTCTGTGGTGCAGTCCACCGTCTCCAGC GGCTATGGCGGTGCCAGCGGTGTCGGCAGTGGCTTGGGCCTGGGTGGAGGCAGTGGCTAC TCCTACAGCAGTGGTCACGGCCTTGGAGGTGGCTTCAGTTCTGGCAGTGGCAGAGCCATA GGAGGTGGCCTCAGCTCCTCTGGGGGCAGCAGTTCCACCATCAAATACACCACCACCACC TCCTCCTCTTCTAGCAGGAAGGGCTACAGGCACTGAAGTCCTGCCATGTGCTCTTGGTCC CACGATGTCTAGGTCTCTCTCATCTGAACTGCCATCTCCTCCATTTTCTTCCTCTCTCTT GCTCCCAACTTCCCTGACTTCTTGAGTTAGAACTGAAGTTCCTGAGTGCCTGCATCTCCC CTTGCTCAATCTGAGCTTTCATTGATCAACACTGGAAGGTCATTGCCTGGGTTCTGATCC AGATCCGAGCAATTCCCCTTGCTCTCCAGTTGTCCAGGATTTCCCATCTTACAGGTTTCA ATGTTAAAGCATGAGTGACAAGTTCTATGCTATACAAGGTGTGGATCCCTGTGATGCTTC CTCTGTTCTTTGCTCACTTGTAATTGCTAAATAAAGCAGATTTATAATACAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 2-497, gnl|bosTau2|chr5 (19990718-19990220) | |
| 2-497, gnl|canFam2|chr27 (5613805-5613496) | |
| 2-497, gnl|danRer3|chr6 (21645388-21645125) | |
| 2-497, gnl|dasNov1|scaffold_12575 (3469-3778) | |
| 2-497, gnl|echTel1|scaffold_312604 (69675-69366) | |
| 2-497, gnl|fr1|chrUn (50210280-50210560) | |
| 2-497, gnl|galGal2|chrUn (7830260-7829939) | |
| 2-497, gnl|hg17|chr12 (51153244-51153550) | |
| 2-497, gnl|Hg17|chr12 (51153742-51153247) | |
| 2-497, gnl|loxAfr1|scaffold_22754 (26277-26580) | |
| 2-497, gnl|mm7|chr15 (101665869-101666148) | |
| 2-497, gnl|Mm7|chr15 (101666340-101665872) | |
| 2-497, gnl|monDom2|scaffold_168 (408713-409085) | |
| 2-497, gnl|oryCun1|scaffold_205889 (93111-93420) | |
| 2-497, gnl|panTro1|chr10 (52376549-52376855) | |
| 2-497, gnl|rheMac2|chr11 (49574968-49575274) | |
| 2-497, gnl|rn3|chr7 (140452216-140452482) | |
| 2-497, gnl|tetNig1|chrUn_random (43165338-43165054) | |
| 2-497, gnl|xenTro1|scaffold_312 (1045701-1045972) | |
| 517-713, gnl|bosTau2|chr5 (19973390-19973199) | |
| 517-713, gnl|Hg17|chr12 (51130650-51130452) | |
| 517-713, gnl|Mm7|chr15 (101632405-101632209) | |
| 864-1039, gnl|bosTau2|chr5 (19882988-19882813) | |
| 864-1039, gnl|Hg17|chr12 (51096184-51096006) | |
| 864-1039, gnl|Mm7|chr15 (101543500-101543325) | |
| 868-1032, gnl|bosTau2|chr5 (20007174-20007010) | |
| 868-1032, gnl|canFam2|chr27 (5598271-5598092) | |
| 868-1032, gnl|danRer3|chr6 (21647641-21647464) | |
| 868-1032, gnl|dasNov1|scaffold_12575 (1484-1663) | |
| 868-1032, gnl|echTel1|scaffold_312604 (71673-71497) | |
| 868-1032, gnl|fr1|chrUn (50208031-50208209) | |
| 868-1032, gnl|galGal2|chrUn (7823245-7823066) | |
| 868-1032, gnl|hg17|chr12 (51170614-51170793) | |
| 868-1032, gnl|Hg17|chr12 (51170784-51170620) | |
| 868-1032, gnl|loxAfr1|scaffold_38488 (13503-13682) | |
| 868-1032, gnl|mm7|chr15 (101678339-101678518) | |
| 868-1032, gnl|Mm7|chr15 (101678509-101678345) | |
| 868-1032, gnl|monDom2|scaffold_168 (428433-428612) | |
| 868-1032, gnl|oryCun1|scaffold_205889 (102366-102544) | |
| 868-1032, gnl|panTro1|chr10 (52394094-52394273) | |
| 868-1032, gnl|rheMac2|chr11 (49572905-49573084) | |
| 868-1032, gnl|rn3|chr7 (140450574-140450753) | |
| 868-1032, gnl|tetNig1|chrUn_random (43154108-43153932) | |
| 868-1032, gnl|xenTro1|scaffold_312 (1060408-1060584) | |
| 1156-1395, gnl|bosTau2|chr5 (20298365-20298127) | |
| 1156-1395, gnl|Hg17|chr12 (51487918-51487681) | |
| 1156-1395, gnl|Mm7|chr15 (101905916-101905681) | |
| 1235-1380, gnl|bosTau2|chr13 (19902346-19902490) | |
| 1235-1380, gnl|Hg17|chr10 (17317251-17317395) | |
| 1235-1380, gnl|Mm7|chr2 (13519253-13519397) | |
| 1441-2032, gnl|bosTau2|chr5 (19986219-19985606) | |
| 1441-2032, gnl|Hg17|chr12 (51149322-51148567) | |
| 1441-2032, gnl|Mm7|chr15 (101662884-101662185) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-497, gnl|bosTau2|chr5 (19990718-19990220) | |
| 2-497, gnl|canFam2|chr27 (5613805-5613496) | |
| 2-497, gnl|danRer3|chr6 (21645388-21645125) | |
| 2-497, gnl|dasNov1|scaffold_12575 (3469-3778) | |
| 2-497, gnl|echTel1|scaffold_312604 (69675-69366) | |
| 2-497, gnl|fr1|chrUn (50210280-50210560) | |
| 2-497, gnl|galGal2|chrUn (7830260-7829939) | |
| 2-497, gnl|hg17|chr12 (51153244-51153550) | |
| 2-497, gnl|Hg17|chr12 (51153742-51153247) | |
| 2-497, gnl|loxAfr1|scaffold_22754 (26277-26580) | |
| 2-497, gnl|mm7|chr15 (101665869-101666148) | |
| 2-497, gnl|Mm7|chr15 (101666340-101665872) | |
| 2-497, gnl|monDom2|scaffold_168 (408713-409085) | |
| 2-497, gnl|oryCun1|scaffold_205889 (93111-93420) | |
| 2-497, gnl|panTro1|chr10 (52376549-52376855) | |
| 2-497, gnl|rheMac2|chr11 (49574968-49575274) | |
| 2-497, gnl|rn3|chr7 (140452216-140452482) | |
| 2-497, gnl|tetNig1|chrUn_random (43165338-43165054) | |
| 2-497, gnl|xenTro1|scaffold_312 (1045701-1045972) | |
| 517-713, gnl|bosTau2|chr5 (19973390-19973199) | |
| 517-713, gnl|Hg17|chr12 (51130650-51130452) | |
| 517-713, gnl|Mm7|chr15 (101632405-101632209) | |
| 864-1039, gnl|bosTau2|chr5 (19882988-19882813) | |
| 864-1039, gnl|Hg17|chr12 (51096184-51096006) | |
| 864-1039, gnl|Mm7|chr15 (101543500-101543325) | |
| 868-1032, gnl|bosTau2|chr5 (20007174-20007010) | |
| 868-1032, gnl|canFam2|chr27 (5598271-5598092) | |
| 868-1032, gnl|danRer3|chr6 (21647641-21647464) | |
| 868-1032, gnl|dasNov1|scaffold_12575 (1484-1663) | |
| 868-1032, gnl|echTel1|scaffold_312604 (71673-71497) | |
| 868-1032, gnl|fr1|chrUn (50208031-50208209) | |
| 868-1032, gnl|galGal2|chrUn (7823245-7823066) | |
| 868-1032, gnl|hg17|chr12 (51170614-51170793) | |
| 868-1032, gnl|Hg17|chr12 (51170784-51170620) | |
| 868-1032, gnl|loxAfr1|scaffold_38488 (13503-13682) | |
| 868-1032, gnl|mm7|chr15 (101678339-101678518) | |
| 868-1032, gnl|Mm7|chr15 (101678509-101678345) | |
| 868-1032, gnl|monDom2|scaffold_168 (428433-428612) | |
| 868-1032, gnl|oryCun1|scaffold_205889 (102366-102544) | |
| 868-1032, gnl|panTro1|chr10 (52394094-52394273) | |
| 868-1032, gnl|rheMac2|chr11 (49572905-49573084) | |
| 868-1032, gnl|rn3|chr7 (140450574-140450753) | |
| 868-1032, gnl|tetNig1|chrUn_random (43154108-43153932) | |
| 868-1032, gnl|xenTro1|scaffold_312 (1060408-1060584) | |
| 1156-1395, gnl|bosTau2|chr5 (20298365-20298127) | |
| 1156-1395, gnl|Hg17|chr12 (51487918-51487681) | |
| 1156-1395, gnl|Mm7|chr15 (101905916-101905681) | |
| 1235-1380, gnl|bosTau2|chr13 (19902346-19902490) | |
| 1235-1380, gnl|Hg17|chr10 (17317251-17317395) | |
| 1235-1380, gnl|Mm7|chr2 (13519253-13519397) | |
| 1441-2032, gnl|bosTau2|chr5 (19986219-19985606) | |
| 1441-2032, gnl|Hg17|chr12 (51149322-51148567) | |
| 1441-2032, gnl|Mm7|chr15 (101662884-101662185) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ton (13.5135) | |
| nep (0.551775) | |
| pla (0.401016) | |
| ret (0.128733) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (13.5135) | |
| nep (0.551775) | |
| pla (0.401016) | |
| ret (0.128733) | |
| eru (0.120048) |