Ss1.1-rton1231b_g4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACATCTCGGTCACAATCCAGGCTGAAGATGCCATCACTCTGGATTTTGATGGTGATGAC CTCCTAGAAACAGGTAAAAATGTGAAAATTACAGATTCTGAAGCAAGTAAGCCAAAAGAT GGGCAGGACGTCATTGCACAGAGCCCGGAGAAGGAAAGCAAGGATTATGAGATGAATGCG AACCATAAAGATGGTAAGAAGGAAGACTGCGTGAAGGGTGATCCTGTCGAGAAGGAAGCC AGAGAAAGTTCTAAGAAAGCAGAATCTGGAGACAAAGAAAAGGATACTTTGAAGAAAGGG CCCTCGTCTACTGGGGCCTCTGGTCAAGCAAAGAGCTCTTCAAAGGAATCTAAAGACAGC AAGACATCATCCAAAGATGACAAAGGAAGTACAAGTAGTACCAGTGGTAGCAGTGGAAGC TCAACTAAAAATATCTGGGTTAGTGGACTTTCTTCAAACACCAAAGCTGCTGATTTGAAG AACCTCTTTGGCAAATATGGAAAGGTTCTGAGTGCAAAAGTAGTTACAAATGCTCGAAGT CCTGGGGCCAAGTGCTATGGCATTGTAACTATGTCTTCAAGCACAGAGGTGTCCAGATGT ATTGCACATCTTCATCGCTCTGAGCTGCATGGGCAGCTGATATCTGTTGAAAAAGTCAAA GGTGATCCTTTTAAGAAAGAGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACATCTCGGTCACAATCCAGGCTGAAGATGCCATCACTCTGGATTTTGATGGTGATGAC CTCCTAGAAACAGGTAAAAATGTGAAAATTACAGATTCTGAAGCAAGTAAGCCAAAAGAT GGGCAGGACGTCATTGCACAGAGCCCGGAGAAGGAAAGCAAGGATTATGAGATGAATGCG AACCATAAAGATGGTAAGAAGGAAGACTGCGTGAAGGGTGATCCTGTCGAGAAGGAAGCC AGAGAAAGTTCTAAGAAAGCAGAATCTGGAGACAAAGAAAAGGATACTTTGAAGAAAGGG CCCTCGTCTACTGGGGCCTCTGGTCAAGCAAAGAGCTCTTCAAAGGAATCTAAAGACAGC AAGACATCATCCAAAGATGACAAAGGAAGTACAAGTAGTACCAGTGGTAGCAGTGGAAGC TCAACTAAAAATATCTGGGTTAGTGGACTTTCTTCAAACACCAAAGCTGCTGATTTGAAG AACCTCTTTGGCAAATATGGAAAGGTTCTGAGTGCAAAAGTAGTTACAAATGCTCGAAGT CCTGGGGCCAAGTGCTATGGCATTGTAACTATGTCTTCAAGCACAGAGGTGTCCAGATGT ATTGCACATCTTCATCGCTCTGAGCTGCATGGGCAGCTGATATCTGTTGAAAAAGTCAAA GGTGATCCTTTTAAGAAAGAGTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-117, - strand, RNAz p=0.897798 | |
| 160-335, + strand, RNAz p=0.93225 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-117, - strand, RNAz p=0.897798 | |
| 160-335, + strand, RNAz p=0.93225 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-335, gnl|bosTau2|chr28 (31544112-31543778) | |
| 1-335, gnl|canFam2|chr30 (26868283-26868579) | |
| 1-335, gnl|danRer3|chr7 (21275477-21275777) | |
| 1-335, gnl|dasNov1|scaffold_50621 (7479-7183) | |
| 1-335, gnl|echTel1|scaffold_202835 (9890-9594) | |
| 1-335, gnl|fr1|chrUn (81399609-81399330) | |
| 1-335, gnl|galGal2|chr10 (7657430-7657134) | |
| 1-335, gnl|hg17|chr15 (56978907-56979203) | |
| 1-335, gnl|Hg17|chr15 (56979294-56978960) | |
| 1-335, gnl|loxAfr1|scaffold_6622 (59729-60025) | |
| 1-335, gnl|mm7|chr9 (70605931-70605634) | |
| 1-335, gnl|Mm7|chr9 (70605541-70605875) | |
| 1-335, gnl|monDom2|scaffold_12 (37257126-37257422) | |
| 1-335, gnl|oryCun1|scaffold_198530 (136485-136189) | |
| 1-335, gnl|panTro1|chr16 (57393006-57393302) | |
| 1-335, gnl|rheMac2|chr7 (37264727-37265023) | |
| 1-335, gnl|rn3|chr8 (75068022-75067725) | |
| 1-335, gnl|tetNig1|chr5 (5515325-5515604) | |
| 1-335, gnl|xenTro1|scaffold_297 (719739-720032) | |
| 503-656, gnl|bosTau2|chr28 (31539069-31538916) | |
| 503-656, gnl|canFam2|chr30 (26863317-26863486) | |
| 503-656, gnl|danRer3|chr7 (21267425-21267594) | |
| 503-656, gnl|dasNov1|scaffold_50621 (12576-12407) | |
| 503-656, gnl|echTel1|scaffold_226118 (9179-9343) | |
| 503-656, gnl|fr1|chrUn (81400552-81400376) | |
| 503-656, gnl|galGal2|chr10 (7662127-7661958) | |
| 503-656, gnl|hg17|chr15 (56973917-56974086) | |
| 503-656, gnl|Hg17|chr15 (56974075-56973922) | |
| 503-656, gnl|loxAfr1|scaffold_6622 (54668-54837) | |
| 503-656, gnl|mm7|chr9 (70611390-70611221) | |
| 503-656, gnl|Mm7|chr9 (70611230-70611383) | |
| 503-656, gnl|monDom2|scaffold_12 (37250878-37251048) | |
| 503-656, gnl|oryCun1|scaffold_198530 (141004-140835) | |
| 503-656, gnl|panTro1|chr16 (57388014-57388183) | |
| 503-656, gnl|rheMac2|chr7 (37259073-37259242) | |
| 503-656, gnl|rn3|chr8 (75072758-75072589) | |
| 503-656, gnl|tetNig1|chr5 (5514370-5514523) | |
| 503-656, gnl|xenTro1|scaffold_297 (714554-714723) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-335, gnl|bosTau2|chr28 (31544112-31543778) | |
| 1-335, gnl|canFam2|chr30 (26868283-26868579) | |
| 1-335, gnl|danRer3|chr7 (21275477-21275777) | |
| 1-335, gnl|dasNov1|scaffold_50621 (7479-7183) | |
| 1-335, gnl|echTel1|scaffold_202835 (9890-9594) | |
| 1-335, gnl|fr1|chrUn (81399609-81399330) | |
| 1-335, gnl|galGal2|chr10 (7657430-7657134) | |
| 1-335, gnl|hg17|chr15 (56978907-56979203) | |
| 1-335, gnl|Hg17|chr15 (56979294-56978960) | |
| 1-335, gnl|loxAfr1|scaffold_6622 (59729-60025) | |
| 1-335, gnl|mm7|chr9 (70605931-70605634) | |
| 1-335, gnl|Mm7|chr9 (70605541-70605875) | |
| 1-335, gnl|monDom2|scaffold_12 (37257126-37257422) | |
| 1-335, gnl|oryCun1|scaffold_198530 (136485-136189) | |
| 1-335, gnl|panTro1|chr16 (57393006-57393302) | |
| 1-335, gnl|rheMac2|chr7 (37264727-37265023) | |
| 1-335, gnl|rn3|chr8 (75068022-75067725) | |
| 1-335, gnl|tetNig1|chr5 (5515325-5515604) | |
| 1-335, gnl|xenTro1|scaffold_297 (719739-720032) | |
| 503-656, gnl|bosTau2|chr28 (31539069-31538916) | |
| 503-656, gnl|canFam2|chr30 (26863317-26863486) | |
| 503-656, gnl|danRer3|chr7 (21267425-21267594) | |
| 503-656, gnl|dasNov1|scaffold_50621 (12576-12407) | |
| 503-656, gnl|echTel1|scaffold_226118 (9179-9343) | |
| 503-656, gnl|fr1|chrUn (81400552-81400376) | |
| 503-656, gnl|galGal2|chr10 (7662127-7661958) | |
| 503-656, gnl|hg17|chr15 (56973917-56974086) | |
| 503-656, gnl|Hg17|chr15 (56974075-56973922) | |
| 503-656, gnl|loxAfr1|scaffold_6622 (54668-54837) | |
| 503-656, gnl|mm7|chr9 (70611390-70611221) | |
| 503-656, gnl|Mm7|chr9 (70611230-70611383) | |
| 503-656, gnl|monDom2|scaffold_12 (37250878-37251048) | |
| 503-656, gnl|oryCun1|scaffold_198530 (141004-140835) | |
| 503-656, gnl|panTro1|chr16 (57388014-57388183) | |
| 503-656, gnl|rheMac2|chr7 (37259073-37259242) | |
| 503-656, gnl|rn3|chr8 (75072758-75072589) | |
| 503-656, gnl|tetNig1|chr5 (5514370-5514523) | |
| 503-656, gnl|xenTro1|scaffold_297 (714554-714723) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| sag (0.182715) | |
| gul (0.177588) | |
| ton (0.1755) | |
| ssp (0.13552) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.182715) | |
| gul (0.177588) | |
| ton (0.1755) | |
| ssp (0.13552) |