Ss1.1-rton1236b_m14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCATCCTGGGCGGCGTGAACAAGCACTCCACCAGCATCGGCAAGATCTGGCTCACGGT GCTCTTCATCTTCCGCGTCATGATCCTGGTGGTGGCGGCCAAGGAGGTGTGGGGCGACGA GCATGCCGACTTCGTCTGCAACACCCTGCAGCCCGGCTGCAAGAACGTCTGCTACGACCA CGGCGTCCCCATCTCGCACATCCGGCTCTGGGCGCTGCAGCTCATCTTCGTGTCCACGCC CGCCCTGCTGGTGGCCATGCACGTGGCCTACCGGCGACACGAGAAGAAAAGGAAGTTCAT CAAGGGCGAGATGAATAGCGAGTTCAAGGACATCGAAGAGATCAAGACCCATAAGGTCCG CATCGAGGGCGCCCTCTGGTGGACCTACACCGGCAGCATCTTCTTCCGCATCCTCTTCGA GGCCGCCTTCATGTACGTGTTCTACGTCATGTACAGCGGGTTCTCCATGCAGCGCCTGGT CAAGTGCAACGCGTGGCCTTGTCCCAACACGGTGGACTGCTTCGTGTCCAGGCCCACGGA GAATACGGTCTTTACGGTTTTCATGGTCGTGGTGTCGGGGATCTGCATTCTGCTCAACGT CACCGAACTGTGCTATTTGCTCATCAGATATTGTTCCGGAAAGTCCAAGAAGCCAGTGTA AGCAGGTCTGGAGAAGAGCGAGCGGGCGGGGACGGACGCGGCCGTCTGCGCCCAGCGGTC GGCCGAGTCACCCGCGTCTCCCAGATACAGATTCCCGTNGTCAAGCTCCCCCCCCACCCG CGACCCTCCTGTGGCCCACGTGGGACTCCAGACGCCTCCGGCTGCGGCCCCGCGGTCGGC CCCGCGGTCCACAGGCGCCGCCGCACAAAGGCCGAGCTCTGTGCCCGCTGAGGCCGTGCC AGGGCGGCCGTGCCCTTCCCTACTGCAAACAGAGGATGTGGCGTTTGTTTCCCTTTCTTT GCGGAAAGGAGAGAAACGCCAGGACCTAACAAGGACGCTGAGCAGGTCTGGTTGATCCGC TTAAGCTTCCCTTTGCAACTTCCCCGAATTAAAGGTAAACATAGAGAATTTGGTTCCTTT ATTTGCTTTGAAGTTTTAGTCTGCAGCAATGGACAGGGTTACCGCATGTGTCCGACTCTG TCATATACTCTTTTAAAATGAACATTTTAAGGAAGATGCGTTCTTTTCACCCACAAGAAA GTCTAGGGAGCATTACGTGTTCCTCCTATTTCAGAGGCAACGACTGCCACATGCAAGTGG TGTAAAATCTAGGTTTCCTCACTAGATTTCCATCTGGCCTTCAGCTCAGAACAGGGTACA GCGCCACCGAGAGGCTGGCGGGGGAATGAAGCTGGGTGGTTCAGGGAGGCGATTCTGCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCATCCTGGGCGGCGTGAACAAGCACTCCACCAGCATCGGCAAGATCTGGCTCACGGT GCTCTTCATCTTCCGCGTCATGATCCTGGTGGTGGCGGCCAAGGAGGTGTGGGGCGACGA GCATGCCGACTTCGTCTGCAACACCCTGCAGCCCGGCTGCAAGAACGTCTGCTACGACCA CGGCGTCCCCATCTCGCACATCCGGCTCTGGGCGCTGCAGCTCATCTTCGTGTCCACGCC CGCCCTGCTGGTGGCCATGCACGTGGCCTACCGGCGACACGAGAAGAAAAGGAAGTTCAT CAAGGGCGAGATGAATAGCGAGTTCAAGGACATCGAAGAGATCAAGACCCATAAGGTCCG CATCGAGGGCGCCCTCTGGTGGACCTACACCGGCAGCATCTTCTTCCGCATCCTCTTCGA GGCCGCCTTCATGTACGTGTTCTACGTCATGTACAGCGGGTTCTCCATGCAGCGCCTGGT CAAGTGCAACGCGTGGCCTTGTCCCAACACGGTGGACTGCTTCGTGTCCAGGCCCACGGA GAATACGGTCTTTACGGTTTTCATGGTCGTGGTGTCGGGGATCTGCATTCTGCTCAACGT CACCGAACTGTGCTATTTGCTCATCAGATATTGTTCCGGAAAGTCCAAGAAGCCAGTGTA AGCAGGTCTGGAGAAGAGCGAGCGGGCGGGGACGGACGCGGCCGTCTGCGCCCAGCGGTC GGCCGAGTCACCCGCGTCTCCCAGATACAGATTCCCGTNGTCAAGCTCCCCCCCCACCCG CGACCCTCCTGTGGCCCACGTGGGACTCCAGACGCCTCCGGCTGCGGCCCCGCGGTCGGC CCCGCGGTCCACAGGCGCCGCCGCACAAAGGCCGAGCTCTGTGCCCGCTGAGGCCGTGCC AGGGCGGCCGTGCCCTTCCCTACTGCAAACAGAGGATGTGGCGTTTGTTTCCCTTTCTTT GCGGAAAGGAGAGAAACGCCAGGACCTAACAAGGACGCTGAGCAGGTCTGGTTGATCCGC TTAAGCTTCCCTTTGCAACTTCCCCGAATTAAAGGTAAACATAGAGAATTTGGTTCCTTT ATTTGCTTTGAAGTTTTAGTCTGCAGCAATGGACAGGGTTACCGCATGTGTCCGACTCTG TCATATACTCTTTTAAAATGAACATTTTAAGGAAGATGCGTTCTTTTCACCCACAAGAAA GTCTAGGGAGCATTACGTGTTCCTCCTATTTCAGAGGCAACGACTGCCACATGCAAGTGG TGTAAAATCTAGGTTTCCTCACTAGATTTCCATCTGGCCTTCAGCTCAGAACAGGGTACA GCGCCACCGAGAGGCTGGCGGGGGAATGAAGCTGGGTGGTTCAGGGAGGCGATTCTGCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 83-202, - strand, RNAz p=0.569875 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 83-202, - strand, RNAz p=0.569875 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 2-661, gnl|bosTau2|chr12 (20140063-20140722) | |
| 2-661, gnl|Hg17|chr13 (19661699-19661040) | |
| 2-661, gnl|Mm7|chr14 (51968447-51967788) | |
| 43-241, gnl|bosTau2|chr10 (19122798-19122600) | |
| 43-241, gnl|canFam2|chr30 (5468398-5468662) | |
| 43-241, gnl|danRer3|chr14 (32898500-32898242) | |
| 43-241, gnl|dasNov1|scaffold_12911 (7735-7471) | |
| 43-241, gnl|echTel1|scaffold_267489 (9676-9399) | |
| 43-241, gnl|fr1|chrUn (63301881-63302128) | |
| 43-241, gnl|galGal2|chr5 (29166960-29166696) | |
| 43-241, gnl|hg17|chr15 (32832627-32832891) | |
| 43-241, gnl|Hg17|chr15 (32832868-32832670) | |
| 43-241, gnl|loxAfr1|scaffold_7781 (65894-66157) | |
| 43-241, gnl|mm7|chr2 (113752525-113752791) | |
| 43-241, gnl|Mm7|chr2 (113752766-113752568) | |
| 43-241, gnl|monDom2|scaffold_12 (9619383-9619116) | |
| 43-241, gnl|oryCun1|scaffold_205165 (22964-22722) | |
| 43-241, gnl|panTro1|chr16 (32613574-32613838) | |
| 43-241, gnl|rheMac2|chr7 (13087652-13087916) | |
| 43-241, gnl|rn3|chr3 (99758994-99759259) | |
| 43-241, gnl|tetNig1|chr10 (7901017-7900773) | |
| 43-241, gnl|xenTro1|scaffold_199 (730670-730413) | |
| 910-1337, gnl|bosTau2|chr12 (20140996-20141411) | |
| 910-1337, gnl|canFam2|chr25 (20941480-20941101) | |
| 910-1337, gnl|dasNov1|scaffold_19229 (4359-4742) | |
| 910-1337, gnl|echTel1|scaffold_293168 (4160-3841) | |
| 910-1337, gnl|hg17|chr13 (19660288-19660655) | |
| 910-1337, gnl|Hg17|chr13 (19660769-19660336) | |
| 910-1337, gnl|mm7|chr14 (51967038-51967404) | |
| 910-1337, gnl|Mm7|chr14 (51967506-51967093) | |
| 910-1337, gnl|monDom2|scaffold_15 (27842844-27843258) | |
| 910-1337, gnl|panTro1|chr14 (18552496-18552863) | |
| 910-1337, gnl|rheMac2|chr17 (1322808-1322441) | |
| 910-1337, gnl|rn3|chr15 (36169942-36170324) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-661, gnl|bosTau2|chr12 (20140063-20140722) | |
| 2-661, gnl|Hg17|chr13 (19661699-19661040) | |
| 2-661, gnl|Mm7|chr14 (51968447-51967788) | |
| 43-241, gnl|bosTau2|chr10 (19122798-19122600) | |
| 43-241, gnl|canFam2|chr30 (5468398-5468662) | |
| 43-241, gnl|danRer3|chr14 (32898500-32898242) | |
| 43-241, gnl|dasNov1|scaffold_12911 (7735-7471) | |
| 43-241, gnl|echTel1|scaffold_267489 (9676-9399) | |
| 43-241, gnl|fr1|chrUn (63301881-63302128) | |
| 43-241, gnl|galGal2|chr5 (29166960-29166696) | |
| 43-241, gnl|hg17|chr15 (32832627-32832891) | |
| 43-241, gnl|Hg17|chr15 (32832868-32832670) | |
| 43-241, gnl|loxAfr1|scaffold_7781 (65894-66157) | |
| 43-241, gnl|mm7|chr2 (113752525-113752791) | |
| 43-241, gnl|Mm7|chr2 (113752766-113752568) | |
| 43-241, gnl|monDom2|scaffold_12 (9619383-9619116) | |
| 43-241, gnl|oryCun1|scaffold_205165 (22964-22722) | |
| 43-241, gnl|panTro1|chr16 (32613574-32613838) | |
| 43-241, gnl|rheMac2|chr7 (13087652-13087916) | |
| 43-241, gnl|rn3|chr3 (99758994-99759259) | |
| 43-241, gnl|tetNig1|chr10 (7901017-7900773) | |
| 43-241, gnl|xenTro1|scaffold_199 (730670-730413) | |
| 910-1337, gnl|bosTau2|chr12 (20140996-20141411) | |
| 910-1337, gnl|canFam2|chr25 (20941480-20941101) | |
| 910-1337, gnl|dasNov1|scaffold_19229 (4359-4742) | |
| 910-1337, gnl|echTel1|scaffold_293168 (4160-3841) | |
| 910-1337, gnl|hg17|chr13 (19660288-19660655) | |
| 910-1337, gnl|Hg17|chr13 (19660769-19660336) | |
| 910-1337, gnl|mm7|chr14 (51967038-51967404) | |
| 910-1337, gnl|Mm7|chr14 (51967506-51967093) | |
| 910-1337, gnl|monDom2|scaffold_15 (27842844-27843258) | |
| 910-1337, gnl|panTro1|chr14 (18552496-18552863) | |
| 910-1337, gnl|rheMac2|chr17 (1322808-1322441) | |
| 910-1337, gnl|rn3|chr15 (36169942-36170324) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) |