Non-Coding RNA Search

Ss1.1-rton1239b_m5.5

Sequence:


               
               TATATATATATATGTGTGTCTCTGTGGTCCTCAGCCACATCGTAGTCAACAACTGTTGGT
TTTTAAGTAGCAACTTTGAATGTAATGTTGCCATCATCCTCATGTGTTTCCACCAAAGGG
AAACCAGCCATTTACCATTTTTAAAGTCTCCTGCTGAGTGTGGAAATCAGGCAGTGGAAG
CCAAAAAGTGTTGCAGATAAACAAGGCCACGTTGTCTTCAAGCCTTCCCCGGGCTGGAGC
AGGGGAGGCCTGGCTGCCTTGGTTTTCCCCTTGGCCTTCAGCACTGCCTCTCCCTCTACC
CCGGGACTCTGGGATCTCCTGGTGCTGCCAGAGGAGCTGCCTCGATTCGAGGGGAGAACC
TCCAACTCAGCCCACTTGAAGTCCTTGGGTGTTGGACGTGTGCCCAGCCTGCTGTGCGGT
GAGCCCATGGGCTGGCCTCCCGCTGACCTCAGTGCCTTTTTGTTTTCAGAGAGGGGACAG
GAGCAGGTGCAGGGCATTTGCTGGAAGCTCTGCAGCTGGCTTGCTCCTGCCAGGAAGGGG
ACCACGGCGGTGTCAGGGACAAGGCCAGGAGAGCCTTCCCTCCAAAGGGGGGACGAGGGT
CTCGGACCTCCTTCTCCACTAAGGTCCTGGGCTCTGCCTTCCAAGAAGGGAGCCCAAACC
GCTGGATGGGAGGGATCAGATTCCCACCTCTACATGCGTACTGCCTCCTTGCCTCCTTGT
TCAAACTTAAACTTGCCAAACCATTCAAGCCTGTAGCCAGGAGTGCAGAGGGAGGACTTT
CCAAGCAGGGCCAGCTTTCCAACCCAGCCTGTGGGAGACCCTTTCTTTTTGCTGTCCTCT
GCCTCCCCAAGTCCCTTGGGTGGGTTGGAGCCGGTGTGTCTTTGTGTAGCCTCAGAAGTT
CCCTCCCTGACCCTCGCTGAGTCCACACTGCCCCTGATCCCAGAAGGGATTAGGACCCCT
CTCATCAGGAAAACCACTTCGTCTTCAGAGCTGCAAACACAGGACAAGCTAAGCAGTCTG
AAGATTTTCAACATCATCAAAAACCCAGTTATCTGCCATCTCCAGCTCAGCCTTATCACC
TCCTTCCCTTGAAAAATCTCTCCTCCTGCTGTAGAGCTATGTGGTGGGTGCAGAGTCCTC
TTCCCTTCACGCTGCATGTCTTTAACGTGAATAGAAGGCACGGCTCCTGCTGCAACCGCT
GTGAATGCTGCTGAGAGCCTCCCTCTGATGGGGCGGCTATTTTATTTTTGAGAAGGAAGT
CATGTACATATATACATAAAAGCATATCGCTATATATAAAGAGATAGGGGTGTTTATGAA
ATAAGAAGACTATGGGGGAAATTCAGACTCTATCTAAAGCACAGGACCCAGACGGAGGTC
CGAGCCTCCGAGACGGTCGTGCGTAGGAGCGACCCTTCCCTCCGGGGTGGGCCTGACTGC
TGGCAGTGCCTTCTGTTGTTGTGTTGCCCACTGTGGAAGTGTTTGTTTTGAGGATATTTT
CTTTTTAAATGTCTTTCTTATATGGGTTTTAAAAAAAAAAAGGAATAAAAGCTTGTTGCA
AAACTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATATATATATGTGTGTCTCTGTGGTCCTCAGCCACATCGTAGTCAACAACTGTTGGT
TTTTAAGTAGCAACTTTGAATGTAATGTTGCCATCATCCTCATGTGTTTCCACCAAAGGG
AAACCAGCCATTTACCATTTTTAAAGTCTCCTGCTGAGTGTGGAAATCAGGCAGTGGAAG
CCAAAAAGTGTTGCAGATAAACAAGGCCACGTTGTCTTCAAGCCTTCCCCGGGCTGGAGC
AGGGGAGGCCTGGCTGCCTTGGTTTTCCCCTTGGCCTTCAGCACTGCCTCTCCCTCTACC
CCGGGACTCTGGGATCTCCTGGTGCTGCCAGAGGAGCTGCCTCGATTCGAGGGGAGAACC
TCCAACTCAGCCCACTTGAAGTCCTTGGGTGTTGGACGTGTGCCCAGCCTGCTGTGCGGT
GAGCCCATGGGCTGGCCTCCCGCTGACCTCAGTGCCTTTTTGTTTTCAGAGAGGGGACAG
GAGCAGGTGCAGGGCATTTGCTGGAAGCTCTGCAGCTGGCTTGCTCCTGCCAGGAAGGGG
ACCACGGCGGTGTCAGGGACAAGGCCAGGAGAGCCTTCCCTCCAAAGGGGGGACGAGGGT
CTCGGACCTCCTTCTCCACTAAGGTCCTGGGCTCTGCCTTCCAAGAAGGGAGCCCAAACC
GCTGGATGGGAGGGATCAGATTCCCACCTCTACATGCGTACTGCCTCCTTGCCTCCTTGT
TCAAACTTAAACTTGCCAAACCATTCAAGCCTGTAGCCAGGAGTGCAGAGGGAGGACTTT
CCAAGCAGGGCCAGCTTTCCAACCCAGCCTGTGGGAGACCCTTTCTTTTTGCTGTCCTCT
GCCTCCCCAAGTCCCTTGGGTGGGTTGGAGCCGGTGTGTCTTTGTGTAGCCTCAGAAGTT
CCCTCCCTGACCCTCGCTGAGTCCACACTGCCCCTGATCCCAGAAGGGATTAGGACCCCT
CTCATCAGGAAAACCACTTCGTCTTCAGAGCTGCAAACACAGGACAAGCTAAGCAGTCTG
AAGATTTTCAACATCATCAAAAACCCAGTTATCTGCCATCTCCAGCTCAGCCTTATCACC
TCCTTCCCTTGAAAAATCTCTCCTCCTGCTGTAGAGCTATGTGGTGGGTGCAGAGTCCTC
TTCCCTTCACGCTGCATGTCTTTAACGTGAATAGAAGGCACGGCTCCTGCTGCAACCGCT
GTGAATGCTGCTGAGAGCCTCCCTCTGATGGGGCGGCTATTTTATTTTTGAGAAGGAAGT
CATGTACATATATACATAAAAGCATATCGCTATATATAAAGAGATAGGGGTGTTTATGAA
ATAAGAAGACTATGGGGGAAATTCAGACTCTATCTAAAGCACAGGACCCAGACGGAGGTC
CGAGCCTCCGAGACGGTCGTGCGTAGGAGCGACCCTTCCCTCCGGGGTGGGCCTGACTGC
TGGCAGTGCCTTCTGTTGTTGTGTTGCCCACTGTGGAAGTGTTTGTTTTGAGGATATTTT
CTTTTTAAATGTCTTTCTTATATGGGTTTTAAAAAAAAAAAGGAATAAAAGCTTGTTGCA
AAACTGAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               6-770, gnl|bosTau2|chr16 (3105320-3106054)
               

               
               6-770, gnl|Hg17|chr1 (203149394-203150169)
               

               
               6-770, gnl|Mm7|chr1 (131082013-131081339)
               


               
               776-1567, gnl|bosTau2|chr16 (3106086-3106844)
               

               
               776-1567, gnl|Hg17|chr1 (203150201-203151002)
               

               
               776-1567, gnl|Mm7|chr1 (131081309-131080529)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-770, gnl|bosTau2|chr16 (3105320-3106054)
               

               
               6-770, gnl|Hg17|chr1 (203149394-203150169)
               

               
               6-770, gnl|Mm7|chr1 (131082013-131081339)
               


               
               776-1567, gnl|bosTau2|chr16 (3106086-3106844)
               

               
               776-1567, gnl|Hg17|chr1 (203150201-203151002)
               

               
               776-1567, gnl|Mm7|chr1 (131081309-131080529)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               thg (0.507164)
               

               
               csp (0.483559)
               

               
               lyg (0.399308)
               

               
               fty (0.351679)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               csp (0.483559)
               

               
               lyg (0.399308)
               

               
               fty (0.351679)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	6-770, gnl\|bosTau2\|chr16 (3105320-3106054)
	6-770, gnl\|Hg17\|chr1 (203149394-203150169)
	6-770, gnl\|Mm7\|chr1 (131082013-131081339)

	776-1567, gnl\|bosTau2\|chr16 (3106086-3106844)
	776-1567, gnl\|Hg17\|chr1 (203150201-203151002)
	776-1567, gnl\|Mm7\|chr1 (131081309-131080529)

	thg (0.507164)
	csp (0.483559)
	lyg (0.399308)
	fty (0.351679)
	fcc (0.197785)
	sag (0.182715)
	ill (0.175593)
	ton (0.1755)
	cje (0.165235)
	cli (0.152812)
	spl (0.143184)
	lnt (0.142308)
	sug (0.127291)
	med (0.116252)
	cty (0.10408)
	nbm (0.0993246)