Non-Coding RNA Search

Ss1.1-rton1240b_e24.5

Sequence:


               
               ATCTATCAGCATCCTACCCATCCTTCAAGGCCCAGCATAGATGCCACCTCCTCCATGAAG
CCTTTCCCCACTGCCCCCACCCCCACCTCCTACAATATTTCAATGCTTCTGCAATGATGA
ATGAGATAAAATAGTTGTAGTCTTTAGTCTAGTCCAGCACGCAATCATTTAAAAAATTAA
TTTGTAGGATTTTCCTAGCACGCTCCTTCTCCTACCGTGTTCTTCAGTCTGTATAACTTC
TGCGGTGCCTTCACCACACTGCCTTACGTAATCCGAACCACAATAAAATTCACATTCAAT
AAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTATCAGCATCCTACCCATCCTTCAAGGCCCAGCATAGATGCCACCTCCTCCATGAAG
CCTTTCCCCACTGCCCCCACCCCCACCTCCTACAATATTTCAATGCTTCTGCAATGATGA
ATGAGATAAAATAGTTGTAGTCTTTAGTCTAGTCCAGCACGCAATCATTTAAAAAATTAA
TTTGTAGGATTTTCCTAGCACGCTCCTTCTCCTACCGTGTTCTTCAGTCTGTATAACTTC
TGCGGTGCCTTCACCACACTGCCTTACGTAATCCGAACCACAATAAAATTCACATTCAAT
AAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-192, - strand, RNAz p=0.546037
               

               
               157-307, - strand, RNAz p=0.810846

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-192, - strand, RNAz p=0.546037
               

               
               157-307, - strand, RNAz p=0.810846

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014289, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014289, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-307, gnl|bosTau2|chrX (19405368-19405068)
               

               
               1-307, gnl|canFam2|chrX (87419369-87419595)
               

               
               1-307, gnl|echTel1|scaffold_311962 (202492-202276)
               

               
               1-307, gnl|hg17|chrX (110294457-110294659)
               

               
               1-307, gnl|Hg17|chrX (110294760-110294472)
               

               
               1-307, gnl|loxAfr1|scaffold_901 (63553-63343)
               

               
               1-307, gnl|mm7|chrX (138466539-138466762)
               

               
               1-307, gnl|Mm7|chrX (138466860-138466552)
               

               
               1-307, gnl|panTro1|chrX (114033038-114033236)
               

               
               1-307, gnl|rheMac2|chrX (109923127-109923325)
               

               
               1-307, gnl|rn3|chrX (34775860-34775639)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-307, gnl|bosTau2|chrX (19405368-19405068)
               

               
               1-307, gnl|canFam2|chrX (87419369-87419595)
               

               
               1-307, gnl|echTel1|scaffold_311962 (202492-202276)
               

               
               1-307, gnl|hg17|chrX (110294457-110294659)
               

               
               1-307, gnl|Hg17|chrX (110294760-110294472)
               

               
               1-307, gnl|loxAfr1|scaffold_901 (63553-63343)
               

               
               1-307, gnl|mm7|chrX (138466539-138466762)
               

               
               1-307, gnl|Mm7|chrX (138466860-138466552)
               

               
               1-307, gnl|panTro1|chrX (114033038-114033236)
               

               
               1-307, gnl|rheMac2|chrX (109923127-109923325)
               

               
               1-307, gnl|rn3|chrX (34775860-34775639)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               amn (0.417711)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	81-192, - strand, RNAz p=0.546037
	157-307, - strand, RNAz p=0.810846

	1-307, gnl\|bosTau2\|chrX (19405368-19405068)
	1-307, gnl\|canFam2\|chrX (87419369-87419595)
	1-307, gnl\|echTel1\|scaffold_311962 (202492-202276)
	1-307, gnl\|hg17\|chrX (110294457-110294659)
	1-307, gnl\|Hg17\|chrX (110294760-110294472)
	1-307, gnl\|loxAfr1\|scaffold_901 (63553-63343)
	1-307, gnl\|mm7\|chrX (138466539-138466762)
	1-307, gnl\|Mm7\|chrX (138466860-138466552)
	1-307, gnl\|panTro1\|chrX (114033038-114033236)
	1-307, gnl\|rheMac2\|chrX (109923127-109923325)
	1-307, gnl\|rn3\|chrX (34775860-34775639)

	amn (0.417711)
	ton (0.1755)
	eye (0.170503)
	ese (0.126502)
	eru (0.120048)